RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 KIAA0355O15063 1070 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 ZEB2O60315 1214 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 CABYRO75952 493 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 C6orf222P0C671 652 aaPredicted RBP16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 SNHG28P0DPA3 235 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 IQSEC1Q6DN90 963 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 KRT23Q9C075 422 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 CNNM2Q9H8M5 875 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 VTA1Q9NP79 307 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 MTMR7Q9Y216 660 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 RAD50Q92878 1312 aa16.94■□□□□ 0.3
HMGCS1-203ENST00000507004 CNTN2Q02246 1040 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 TNFAIP2Q03169 654 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 ZNF543Q08ER8 600 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 KCNA10Q16322 511 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 GNASQ5JWF2 1037 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 FAM109BQ6ICB4 259 aaPredicted RBP16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 CCSAPQ6IQ19 270 aaPredicted RBP16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 NSMFQ6X4W1 530 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 RUFY2Q8WXA3 655 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 ANKS1AQ92625 1134 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 KATNBL1Q9H079 304 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 AP5M1Q9H0R1 490 aa16.93■□□□□ 0.3
HMGCS1-203ENST00000507004 RANBP2P49792 3224 aaKnown RBP16.92■□□□□ 0.3
HMGCS1-203ENST00000507004 A0A0U1RQG5 324 aaPredicted RBP16.92■□□□□ 0.3
HMGCS1-203ENST00000507004 SOWAHBA6NEL2 793 aa16.92■□□□□ 0.3
HMGCS1-203ENST00000507004 RAG1P15918 1043 aa16.92■□□□□ 0.3
HMGCS1-203ENST00000507004 TBC1D10CQ8IV04 446 aa16.92■□□□□ 0.3
HMGCS1-203ENST00000507004 MORC4Q8TE76 937 aa16.92■□□□□ 0.3
HMGCS1-203ENST00000507004 TMEM39AQ9NV64 488 aa16.92■□□□□ 0.3
HMGCS1-203ENST00000507004 TLR3O15455 904 aaKnown RBP16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 PQBP1O60828 265 aaKnown RBP16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 ASGR1P07306 291 aa16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 TTBK2Q6IQ55 1244 aa16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 NOL8Q76FK4 1167 aaKnown RBP16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 DEFB123Q8N688 67 aa16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 RGS22Q8NE09 1264 aa16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 BADQ92934 168 aa16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 KAT14Q9H8E8 782 aa16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 GPCPD1Q9NPB8 672 aa16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 SUPT16HQ9Y5B9 1047 aaKnown RBP16.91■□□□□ 0.3
HMGCS1-203ENST00000507004 SLC16A2P36021 539 aa16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 ASPRV1Q53RT3 343 aa16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 MUM1L1Q5H9M0 696 aa16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 PNMA1Q8ND90 353 aa16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 DNERQ8NFT8 737 aa16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 VTI1AQ96AJ9 217 aa16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 LENG1Q96BZ8 264 aaPredicted RBP16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 CHMP4CQ96CF2 233 aa16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 GNEQ9Y223 722 aaKnown RBP16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 FRMPD2Q68DX3 1309 aaPredicted RBP16.9■□□□□ 0.3
HMGCS1-203ENST00000507004 MCM3APO60318 1980 aa16.89■□□□□ 0.3
HMGCS1-203ENST00000507004 LTBP2Q14767 1821 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 TRIM43BA6NCK2 446 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 ARVCFO00192 962 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 KDM4AO75164 1064 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 TRDNQ13061 729 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 BAATQ14032 418 aaPredicted RBP16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 TTC22Q5TAA0 569 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 RNF207Q6ZRF8 634 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 TLK2Q86UE8 772 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 TRIM43Q96BQ3 446 aaPredicted RBP16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 ZSCAN10Q96SZ4 725 aaPredicted RBP16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 UBAC1Q9BSL1 405 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 NEDD4P46934 1319 aa16.89■□□□□ 0.29
HMGCS1-203ENST00000507004 PTPDC1A2A3K4 754 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 NKRFO15226 690 aaKnown RBP eCLIP16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 CDK7P50613 346 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 ALDH5A1P51649 535 aaPredicted RBP16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 SNAP25P60880 206 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 FPGSQ05932 587 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 FAAP100Q0VG06 881 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 TRAF1Q13077 416 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 BRDTQ58F21 947 aaPredicted RBP16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 SH3RF1Q7Z6J0 888 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 STXBP5LQ9Y2K9 1186 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 LAMA4Q16363 1823 aa16.88■□□□□ 0.29
HMGCS1-203ENST00000507004 MYADML2A6NDP7 307 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 B4E1Z4 1266 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 TIMP1P01033 207 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 SMAD3P84022 425 aaKnown RBP16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 SHHQ15465 462 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 FSCN1Q16658 493 aaKnown RBP16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 DUSP28Q4G0W2 176 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 KIAA1211Q6ZU35 1233 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 RASGRP2Q7LDG7 609 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 MCF2L2Q86YR7 1114 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 MTMR10Q9NXD2 777 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 ZSWIM5Q9P217 1185 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 TBX21Q9UL17 535 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 U3KPZ7 1027 aaPredicted RBP16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 ABCB11O95342 1321 aa16.87■□□□□ 0.29
HMGCS1-203ENST00000507004 TMEM265A0A087WTH1 108 aa16.86■□□□□ 0.29
HMGCS1-203ENST00000507004 RBM47A0AV96 593 aaKnown RBP16.86■□□□□ 0.29
HMGCS1-203ENST00000507004 NFIBO00712 420 aa16.86■□□□□ 0.29
HMGCS1-203ENST00000507004 DYNC1LI2O43237 492 aaPredicted RBP16.86■□□□□ 0.29
HMGCS1-203ENST00000507004 ADCY6O43306 1168 aa16.86■□□□□ 0.29
HMGCS1-203ENST00000507004 PARP1P09874 1014 aaKnown RBP16.86■□□□□ 0.29
HMGCS1-203ENST00000507004 SMPD1P17405 629 aa16.86■□□□□ 0.29
HMGCS1-203ENST00000507004 PPIGQ13427 754 aaKnown RBP eCLIP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms