RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CNTN2Q02246 1040 aa24.83■■□□□ 1.57
SQSTM1-210ENST00000506042 NSMFQ6X4W1 530 aa24.83■■□□□ 1.57
SQSTM1-210ENST00000506042 PI4K2BQ8TCG2 481 aa24.83■■□□□ 1.57
SQSTM1-210ENST00000506042 AGBL1Q96MI9 1066 aa24.83■■□□□ 1.57
SQSTM1-210ENST00000506042 HIPK3Q9H422 1215 aa24.83■■□□□ 1.57
SQSTM1-210ENST00000506042 MCM3APO60318 1980 aa24.83■■□□□ 1.57
SQSTM1-210ENST00000506042 ICAM1P05362 532 aa24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 ITGA7Q13683 1181 aa24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 KCTD1Q719H9 257 aa24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 SEC62Q99442 399 aaKnown RBP24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 IL23AQ9NPF7 189 aa24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 GPHNQ9NQX3 736 aaPredicted RBP24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 HELLSQ9NRZ9 838 aa24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 POLR3EQ9NVU0 708 aa24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 PRR12Q9ULL5 1215 aa24.82■■□□□ 1.56
SQSTM1-210ENST00000506042 FGBP02675 491 aa24.81■■□□□ 1.56
SQSTM1-210ENST00000506042 SUPT20HL2P0C7V6 817 aa24.81■■□□□ 1.56
SQSTM1-210ENST00000506042 CSF2RAP15509 400 aa24.81■■□□□ 1.56
SQSTM1-210ENST00000506042 MFAP1P55081 439 aaKnown RBP24.81■■□□□ 1.56
SQSTM1-210ENST00000506042 CYP39A1Q9NYL5 469 aa24.81■■□□□ 1.56
SQSTM1-210ENST00000506042 ANAPC4Q9UJX5 808 aa24.81■■□□□ 1.56
SQSTM1-210ENST00000506042 DYNC1LI2O43237 492 aaPredicted RBP24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 ORC4O43929 436 aa24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 PCP11498 1178 aaKnown RBP24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 CPT1AP50416 773 aa24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 TMEM240Q5SV17 173 aa24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 CXCL17Q6UXB2 119 aa24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 IL27Q8NEV9 243 aa24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 FGD4Q96M96 766 aa24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 TSPYL2Q9H2G4 693 aaPredicted RBP24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 MTMR7Q9Y216 660 aa24.8■■□□□ 1.56
SQSTM1-210ENST00000506042 TOP1P11387 765 aaKnown RBP24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 NT5C2P49902 561 aa24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 BEX3Q00994 111 aa24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 KIAA1211Q6ZU35 1233 aa24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 ZNF365Q70YC5 407 aa24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 KATNBL1Q9H079 304 aa24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 GNEQ9Y223 722 aaKnown RBP24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 ZNF536O15090 1300 aa24.79■■□□□ 1.56
SQSTM1-210ENST00000506042 SOWAHBA6NEL2 793 aa24.78■■□□□ 1.56
SQSTM1-210ENST00000506042 CD4P01730 458 aa24.78■■□□□ 1.56
SQSTM1-210ENST00000506042 PFKMP08237 780 aa24.78■■□□□ 1.56
SQSTM1-210ENST00000506042 CTDSPL2Q05D32 466 aa24.78■■□□□ 1.56
SQSTM1-210ENST00000506042 SLC28A3Q9HAS3 691 aa24.78■■□□□ 1.56
SQSTM1-210ENST00000506042 ADCY6O43306 1168 aa24.77■■□□□ 1.56
SQSTM1-210ENST00000506042 GRIN2CQ14957 1233 aa24.77■■□□□ 1.56
SQSTM1-210ENST00000506042 ALX1Q15699 326 aa24.77■■□□□ 1.56
SQSTM1-210ENST00000506042 TJAP1Q5JTD0 557 aa24.77■■□□□ 1.56
SQSTM1-210ENST00000506042 ANKRD45Q5TZF3 282 aa24.77■■□□□ 1.56
SQSTM1-210ENST00000506042 SLC43A3Q8NBI5 491 aa24.77■■□□□ 1.56
SQSTM1-210ENST00000506042 HERVK_113Q902F9 699 aa24.77■■□□□ 1.56
SQSTM1-210ENST00000506042 PTPDC1A2A3K4 754 aa24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 NKRFO15226 690 aaKnown RBP eCLIP24.76■■□□□ 1.555e-7■□□□□ 11.3
SQSTM1-210ENST00000506042 KPNA6O60684 536 aa24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 CYP2C18P33260 490 aa24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 RRP12Q5JTH9 1297 aaKnown RBP24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 SYDE2Q5VT97 1194 aa24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 FBXO16Q8IX29 292 aaPredicted RBP24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 CHMP4CQ96CF2 233 aa24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 RANBP17Q9H2T7 1088 aaKnown RBP24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 RNF41Q9H4P4 317 aaPredicted RBP24.76■■□□□ 1.55
SQSTM1-210ENST00000506042 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 ACTN1P12814 892 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 SMPD1P17405 629 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 PDE4DQ08499 809 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 DUSP28Q4G0W2 176 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 MCMDC2Q4G0Z9 681 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 AKNAD1Q5T1N1 836 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 EEPD1Q7L9B9 569 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 TTC14Q96N46 770 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 PBX4Q9BYU1 374 aa24.75■■□□□ 1.55
SQSTM1-210ENST00000506042 CUL9Q8IWT3 2517 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 ACRP10323 421 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 CCDC178Q5BJE1 867 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 RASIP1Q5U651 963 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 BTNL9Q6UXG8 535 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 IL17RBQ9NRM6 502 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 TCP11L1Q9NUJ3 509 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 SLC4A7Q9Y6M7 1214 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 ZMYM6O95789 1325 aa24.74■■□□□ 1.55
SQSTM1-210ENST00000506042 CTAGE5O15320 804 aa24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 ALDH5A1P51649 535 aaPredicted RBP24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 MUM1L1Q5H9M0 696 aa24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 MFSD6Q6ZSS7 791 aa24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 MORC4Q8TE76 937 aa24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 ATXN2LQ8WWM7 1075 aaKnown RBP24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 WDR11Q9BZH6 1224 aa24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 MAF1Q9H063 256 aa24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 PCDHB15Q9Y5E8 787 aa24.73■■□□□ 1.55
SQSTM1-210ENST00000506042 LRRC37A2A6NM11 1700 aa24.72■■□□□ 1.55
SQSTM1-210ENST00000506042 NMT2O60551 498 aa24.72■■□□□ 1.55
SQSTM1-210ENST00000506042 IRX5P78411 483 aaPredicted RBP24.72■■□□□ 1.55
SQSTM1-210ENST00000506042 BAATQ14032 418 aaPredicted RBP24.72■■□□□ 1.55
SQSTM1-210ENST00000506042 PPP2R5BQ15173 497 aa24.72■■□□□ 1.55
SQSTM1-210ENST00000506042 GPATCH4Q5T3I0 446 aaKnown RBP24.72■■□□□ 1.55
SQSTM1-210ENST00000506042 RNF207Q6ZRF8 634 aa24.72■■□□□ 1.55
SQSTM1-210ENST00000506042 DNERQ8NFT8 737 aa24.72■■□□□ 1.55
SQSTM1-210ENST00000506042 ASTN1O14525 1302 aa24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 ZBBXA8MT70 800 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms