RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ALDH8A1Q9H2A2 487 aaPredicted RBP11.67□□□□□ -0.54
NUP54-203ENST00000504173 HOXC10Q9NYD6 342 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 PPP1R9AQ9ULJ8 1098 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 PALM3A6NDB9 673 aaPredicted RBP11.66□□□□□ -0.54
NUP54-203ENST00000504173 ST18O60284 1047 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 PLA2G6O60733 806 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 COL6A1P12109 1028 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 DSG3P32926 999 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 SLC16A2P36021 539 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 GCLCP48506 637 aaPredicted RBP11.66□□□□□ -0.54
NUP54-203ENST00000504173 GNAQP50148 359 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 METAP2P50579 478 aaKnown RBP eCLIP11.66□□□□□ -0.54
NUP54-203ENST00000504173 RCAN1P53805 252 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 RTN1Q16799 776 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 SYDE2Q5VT97 1194 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 STAG2Q8N3U4 1231 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 PRPF38AQ8NAV1 312 aaKnown RBP11.66□□□□□ -0.54
NUP54-203ENST00000504173 FANCBQ8NB91 859 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 ATG4CQ96DT6 458 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 MAP3K14Q99558 947 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 PAGR1Q9BTK6 254 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 MAD2L2Q9UI95 211 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 OGDHLQ9ULD0 1010 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 CTDP1Q9Y5B0 961 aaPredicted RBP11.66□□□□□ -0.54
NUP54-203ENST00000504173 MGAMO43451 1857 aa11.66□□□□□ -0.54
NUP54-203ENST00000504173 KLRF2D3W0D1 207 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 DHX16O60231 1041 aaKnown RBP11.65□□□□□ -0.54
NUP54-203ENST00000504173 PDIA3P30101 505 aaKnown RBP11.65□□□□□ -0.54
NUP54-203ENST00000504173 EVCP57679 992 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 BTNL9Q6UXG8 535 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 IL27Q8NEV9 243 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 LRFN3Q9BTN0 628 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 UBA5Q9GZZ9 404 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 CPVLQ9H3G5 476 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 RBM28Q9NW13 759 aaKnown RBP11.65□□□□□ -0.54
NUP54-203ENST00000504173 PRR12Q9ULL5 1215 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 TPCN1Q9ULQ1 816 aa11.65□□□□□ -0.54
NUP54-203ENST00000504173 PARP14Q460N5 1801 aa11.65□□□□□ -0.55
NUP54-203ENST00000504173 RLFQ13129 1914 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 CCDC196A0A1B0GTZ2 297 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 VWA5AO00534 786 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 ZBED4O75132 1171 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 PLEKHA8P1O95397 391 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 STK3Q13188 491 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 PPP2R5BQ15173 497 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 LBX2Q6XYB7 198 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 ANKRD13CQ8N6S4 541 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 MB21D1Q8N884 522 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 ZNF274Q96GC6 653 aaPredicted RBP11.64□□□□□ -0.55
NUP54-203ENST00000504173 LBHD1Q9BQE6 289 aaPredicted RBP11.64□□□□□ -0.55
NUP54-203ENST00000504173 LZTS2Q9BRK4 669 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 SLKQ9H2G2 1235 aaPredicted RBP11.64□□□□□ -0.55
NUP54-203ENST00000504173 VAT1LQ9HCJ6 419 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 RABGAP1Q9Y3P9 1069 aa11.64□□□□□ -0.55
NUP54-203ENST00000504173 FDX1P10109 184 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 SNAP25P60880 206 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 ERVK-9P63128 1117 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 ERVK-24P63145 666 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 CCT2P78371 535 aaKnown RBP11.63□□□□□ -0.55
NUP54-203ENST00000504173 PLS1Q14651 629 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 FAM110CQ1W6H9 321 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 TMTC3Q6ZXV5 915 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 ADGRF4Q8IZF3 695 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 RANBP17Q9H2T7 1088 aaKnown RBP11.63□□□□□ -0.55
NUP54-203ENST00000504173 SLC38A10Q9HBR0 1119 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 TXNRD2Q9NNW7 524 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 BTBD7Q9P203 1132 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 THEGQ9P2T0 379 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 RBPJLQ9UBG7 517 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 MORF4L1Q9UBU8 362 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 ADAMTS5Q9UNA0 930 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 LIMCH1Q9UPQ0 1083 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 NID2Q14112 1375 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 A0A0G2JMZ2 1700 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 DNAH12Q6ZR08 3092 aa11.63□□□□□ -0.55
NUP54-203ENST00000504173 PEX10O60683 326 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 PFKFB2O60825 505 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 CNMDO75829 334 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 HMGCRP04035 888 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 CDC27P30260 824 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 ADD1P35611 737 aaKnown RBP11.62□□□□□ -0.55
NUP54-203ENST00000504173 MCM2P49736 904 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 CCNA1P78396 465 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 MRPS5P82675 430 aaKnown RBP11.62□□□□□ -0.55
NUP54-203ENST00000504173 TMEM132BQ14DG7 1078 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 CDC37Q16543 378 aaPredicted RBP11.62□□□□□ -0.55
NUP54-203ENST00000504173 LRRC26Q2I0M4 334 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 CCDC174Q6PII3 467 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 POTEEQ6S8J3 1075 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 CPXCR1Q8N123 301 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 CMTR1Q8N1G2 835 aaKnown RBP11.62□□□□□ -0.55
NUP54-203ENST00000504173 CCDC82Q8N4S0 544 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 SRBD1Q8N5C6 995 aaKnown RBP11.62□□□□□ -0.55
NUP54-203ENST00000504173 REPS2Q8NFH8 660 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 GPRC5AQ8NFJ5 357 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 PIBF1Q8WXW3 757 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 SPZ1Q9BXG8 430 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 JMJD4Q9H9V9 463 aa11.62□□□□□ -0.55
NUP54-203ENST00000504173 NCOA5Q9HCD5 579 aaKnown RBP11.62□□□□□ -0.55
NUP54-203ENST00000504173 FAM217BQ9NTX9 383 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms