RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	ZBTB42	B2RXF5	422 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	NPHP1	O15259	732 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	PSAP	P07602	524 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	SNRPA1	P09661	255 aa	Known RBP	5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	MAPT	P10636	758 aa	Known RBP	5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	AMPD3	Q01432	767 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	SPEM2	Q0P670	501 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	HLF	Q16534	295 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	TNNI3K	Q59H18	835 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	RAB44	Q7Z6P3	723 aa	Predicted RBP	5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	PGBD3	Q8N328	593 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	STK35	Q8TDR2	534 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	STAG1	Q8WVM7	1258 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	GAL3ST3	Q96A11	431 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	SHISA4	Q96DD7	197 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	CDCA5	Q96FF9	252 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	ZNF333	Q96JL9	665 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	NSUN5	Q96P11	429 aa	Known RBP	5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	GAS2L1	Q99501	681 aa	Predicted RBP	5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	MUC3B	Q9H195	1237 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	ZFYVE1	Q9HBF4	777 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	NIP7	Q9Y221	180 aa	Known RBP eCLIP	5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	ZNF652	Q9Y2D9	606 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	PCDHGC4	Q9Y5F7	938 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	CDH23	Q9H251	3354 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	SCN9A	Q15858	1988 aa		5.53	□□□□□ -1.52
VPS52-222	ENST00000495981	PIEZO1	Q92508	2521 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	MAP3K15	Q6ZN16	1313 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	KHNYN	O15037	678 aa	Known RBP	5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	BNIP3L	O60238	219 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	CILP	O75339	1184 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	CDC45	O75419	566 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	NTSR2	O95665	410 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	ATP11A	P98196	1134 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	PLAUR	Q03405	335 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	CLC	Q05315	142 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	LAMC2	Q13753	1193 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	SEPT6	Q14141	434 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	LBR	Q14739	615 aa	Known RBP	5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	EFHC2	Q5JST6	749 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	RNF187	Q5TA31	235 aa	Predicted RBP	5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	INTS3	Q68E01	1043 aa	Known RBP	5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	DHX32	Q7L7V1	743 aa	Known RBP	5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	DEFB123	Q8N688	67 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	PLEKHF1	Q96S99	279 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	RASSF4	Q9H2L5	321 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	BRMS1	Q9HCU9	246 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	ST7	Q9NRC1	585 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	TMEM260	Q9NX78	707 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	MAPK8IP1	Q9UQF2	711 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	LEMD3	Q9Y2U8	911 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	SPEF2	Q9C093	1822 aa		5.52	□□□□□ -1.53
VPS52-222	ENST00000495981	CACNA1A	O00555	2505 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	ZNF609	O15014	1411 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	PDE2A	O00408	941 aa	Predicted RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	PSMD14	O00487	310 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	PDPK1	O15530	556 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	HTATSF1	O43719	755 aa	Known RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	DNAJC6	O75061	913 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	AVP	P01185	164 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	U2AF1L5	P0DN76	240 aa	Predicted RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	SELP	P16109	830 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	ALDH1B1	P30837	517 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	HOXA10	P31260	410 aa	Predicted RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	NRL	P54845	237 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	U2AF1	Q01081	240 aa	Known RBP eCLIP	5.51	□□□□□ -1.53	3e-7	■■□□□ 12.8
VPS52-222	ENST00000495981	PTPN11	Q06124	597 aa	Predicted RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	RASGRF1	Q13972	1273 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	MPP2	Q14168	576 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	TKFC	Q3LXA3	575 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	FIGNL1	Q6PIW4	674 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	TTLL7	Q6ZT98	887 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	REC114	Q7Z4M0	266 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	UBE2Q1	Q7Z7E8	422 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	LSR	Q86X29	649 aa	Predicted RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	RBBP8NL	Q8NC74	664 aa	Predicted RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	CD99L2	Q8TCZ2	262 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	CFAP53	Q96M91	514 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	THUMPD2	Q9BTF0	503 aa	Known RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	RTFDC1	Q9BY42	306 aa	Predicted RBP	5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	PBX4	Q9BYU1	374 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	SPC25	Q9HBM1	224 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	TMEM39A	Q9NV64	488 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	MTMR10	Q9NXD2	777 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	ACTR10	Q9NZ32	417 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	GGA3	Q9NZ52	723 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	STAP2	Q9UGK3	403 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	STXBP5L	Q9Y2K9	1186 aa		5.51	□□□□□ -1.53
VPS52-222	ENST00000495981	ERVV-1	B6SEH8	477 aa		5.5	□□□□□ -1.53
VPS52-222	ENST00000495981		J3QW42	95 aa		5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	IGF2BP3	O00425	579 aa	Known RBP eCLIP	5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	CLSTN1	O94985	981 aa		5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	CD33	P20138	364 aa		5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	EIF4A1	P60842	406 aa	Known RBP	5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	GPLD1	P80108	840 aa		5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	CNGB1	Q14028	1251 aa	Predicted RBP	5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	ZNF423	Q2M1K9	1284 aa		5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	PROSER3	Q2NL68	480 aa		5.5	□□□□□ -1.53
VPS52-222	ENST00000495981	REXO1	Q8N1G1	1221 aa	Known RBP	5.5	□□□□□ -1.53

Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms