RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-221ENST00000495755 TRIM60Q495X7 471 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 IQCA1Q86XH1 822 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 ENAHQ8N8S7 591 aaPredicted RBP8.47□□□□□ -1.05
VPS52-221ENST00000495755 PNMA1Q8ND90 353 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 CLEC4DQ8WXI8 215 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 PURBQ96QR8 312 aaKnown RBP8.47□□□□□ -1.05
VPS52-221ENST00000495755 KRT23Q9C075 422 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 UPF3AQ9H1J1 476 aaKnown RBP8.47□□□□□ -1.05
VPS52-221ENST00000495755 CNNM2Q9H8M5 875 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 PNMA2Q9UL42 364 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 ATP11BQ9Y2G3 1177 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 SYNRGQ9UMZ2 1314 aa8.47□□□□□ -1.05
VPS52-221ENST00000495755 LAMA4Q16363 1823 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 MYADML2A6NDP7 307 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 MOXD2PA6NHM9 499 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 NFIBO00712 420 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 CTAGE5O15320 804 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 CST5P28325 142 aaPredicted RBP8.46□□□□□ -1.06
VPS52-221ENST00000495755 GJA9P57773 515 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 IRX5P78411 483 aaPredicted RBP8.46□□□□□ -1.06
VPS52-221ENST00000495755 MDM2Q00987 491 aaPredicted RBP8.46□□□□□ -1.06
VPS52-221ENST00000495755 PTH1RQ03431 593 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 TLE2Q04725 743 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 BAATQ14032 418 aaPredicted RBP8.46□□□□□ -1.06
VPS52-221ENST00000495755 KCNA10Q16322 511 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 LRIT3Q3SXY7 679 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 GPATCH4Q5T3I0 446 aaKnown RBP8.46□□□□□ -1.06
VPS52-221ENST00000495755 NSMFQ6X4W1 530 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 TDHQ8IZJ6 230 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 MORC4Q8TE76 937 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 RUFY2Q8WXA3 655 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 UBE2OQ9C0C9 1292 aaKnown RBP8.46□□□□□ -1.06
VPS52-221ENST00000495755 UBA5Q9GZZ9 404 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 CPVLQ9H3G5 476 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 KAT14Q9H8E8 782 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 DDX49Q9Y6V7 483 aaKnown RBP8.46□□□□□ -1.06
VPS52-221ENST00000495755 TNKSO95271 1327 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 WDR19Q8NEZ3 1342 aa8.46□□□□□ -1.06
VPS52-221ENST00000495755 LOC102724159A0A0B4J2E5 919 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.45□□□□□ -1.06
VPS52-221ENST00000495755 TRIM43BA6NCK2 446 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 SGSM2O43147 1006 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 CYP21A2P08686 494 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 TNFAIP2Q03169 654 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 PWP2Q15269 919 aaKnown RBP8.45□□□□□ -1.06
VPS52-221ENST00000495755 SEC23AQ15436 765 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 IQSEC1Q6DN90 963 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 TAPT1Q6NXT6 567 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 CYB5R4Q7L1T6 521 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 ANKRD33Q7Z3H0 272 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 SH3RF1Q7Z6J0 888 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 RGS22Q8NE09 1264 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 MAP4K1Q92918 833 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 TRIM43Q96BQ3 446 aaPredicted RBP8.45□□□□□ -1.06
VPS52-221ENST00000495755 LRCH3Q96II8 777 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 TOX2Q96NM4 488 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 LBHD1Q9BQE6 289 aaPredicted RBP8.45□□□□□ -1.06
VPS52-221ENST00000495755 UBAC1Q9BSL1 405 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 PDLIM7Q9NR12 457 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 PDGFCQ9NRA1 345 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 PRKAG2Q9UGJ0 569 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 GNEQ9Y223 722 aaKnown RBP8.45□□□□□ -1.06
VPS52-221ENST00000495755 U3KPZ7 1027 aaPredicted RBP8.45□□□□□ -1.06
VPS52-221ENST00000495755 ELP1O95163 1332 aa8.45□□□□□ -1.06
VPS52-221ENST00000495755 RBM47A0AV96 593 aaKnown RBP8.44□□□□□ -1.06
VPS52-221ENST00000495755 PTPDC1A2A3K4 754 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 KIAA0355O15063 1070 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 ASGR1P07306 291 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 C6orf222P0C671 652 aaPredicted RBP8.44□□□□□ -1.06
VPS52-221ENST00000495755 SMPD1P17405 629 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 CDK7P50613 346 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 ALDH5A1P51649 535 aaPredicted RBP8.44□□□□□ -1.06
VPS52-221ENST00000495755 RPS6P62753 249 aaKnown RBP8.44□□□□□ -1.06
VPS52-221ENST00000495755 ASPRV1Q53RT3 343 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 GNASQ5JWF2 1037 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 TMEM63BQ5T3F8 832 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 IFIT1BQ5T764 474 aaKnown RBP8.44□□□□□ -1.06
VPS52-221ENST00000495755 SLC30A10Q6XR72 485 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 RNF207Q6ZRF8 634 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 ADGRF4Q8IZF3 695 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 PCSK9Q8NBP7 692 aaKnown RBP8.44□□□□□ -1.06
VPS52-221ENST00000495755 NUP133Q8WUM0 1156 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 BADQ92934 168 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 MAF1Q9H063 256 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 SPC25Q9HBM1 224 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 VTA1Q9NP79 307 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 STARD7Q9NQZ5 370 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 ADD3Q9UEY8 706 aaKnown RBP8.44□□□□□ -1.06
VPS52-221ENST00000495755 TAF6LQ9Y6J9 622 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 MCM3APO60318 1980 aa8.44□□□□□ -1.06
VPS52-221ENST00000495755 E7EWF7 191 aa8.43□□□□□ -1.06
VPS52-221ENST00000495755 DYNC1LI2O43237 492 aaPredicted RBP8.43□□□□□ -1.06
VPS52-221ENST00000495755 PQBP1O60828 265 aaKnown RBP8.43□□□□□ -1.06
VPS52-221ENST00000495755 CLTBP09497 229 aa8.43□□□□□ -1.06
VPS52-221ENST00000495755 PARP1P09874 1014 aaKnown RBP8.43□□□□□ -1.06
VPS52-221ENST00000495755 PTGS1P23219 599 aa8.43□□□□□ -1.06
VPS52-221ENST00000495755 EDNRBP24530 442 aa8.43□□□□□ -1.06
VPS52-221ENST00000495755 ITGB8P26012 769 aa8.43□□□□□ -1.06
VPS52-221ENST00000495755 CALML3P27482 149 aa8.43□□□□□ -1.06
VPS52-221ENST00000495755 FAAP100Q0VG06 881 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms