RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 FOSL2P15408 326 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 NT5C2P49902 561 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 FAAP100Q0VG06 881 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 MFSD5Q6N075 450 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 PSRC1Q6PGN9 363 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-213ENST00000493475 POTEGQ6S5H5 508 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 MAFAQ8NHW3 353 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-213ENST00000493475 LENG1Q96BZ8 264 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-213ENST00000493475 GUCD1Q96NT3 240 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 CDX2Q99626 313 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-213ENST00000493475 UPF3AQ9H1J1 476 aaKnown RBP13.66□□□□□ -0.22
COL6A3-213ENST00000493475 SEMA6BQ9H3T3 888 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 CCPG1Q9ULG6 757 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 A0A0C4DFX4 3053 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 RAD50Q92878 1312 aa13.65□□□□□ -0.22
COL6A3-213ENST00000493475 LTBP2Q14767 1821 aa13.65□□□□□ -0.22
COL6A3-213ENST00000493475 LOC102724159A0A0B4J2E5 919 aa13.65□□□□□ -0.22
COL6A3-213ENST00000493475 ORC4O43929 436 aa13.65□□□□□ -0.22
COL6A3-213ENST00000493475 PWP2Q15269 919 aaKnown RBP13.65□□□□□ -0.22
COL6A3-213ENST00000493475 TLK2Q86UE8 772 aa13.65□□□□□ -0.22
COL6A3-213ENST00000493475 SEC62Q99442 399 aaKnown RBP13.65□□□□□ -0.22
COL6A3-213ENST00000493475 RNF41Q9H4P4 317 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-213ENST00000493475 VTA1Q9NP79 307 aa13.65□□□□□ -0.22
COL6A3-213ENST00000493475 A1CFQ9NQ94 594 aaKnown RBP13.65□□□□□ -0.22
COL6A3-213ENST00000493475 ANAPC4Q9UJX5 808 aa13.65□□□□□ -0.22
COL6A3-213ENST00000493475 ZNFX1Q9P2E3 1918 aaKnown RBP13.64□□□□□ -0.23
COL6A3-213ENST00000493475 ICAM1P05362 532 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 TOP1P11387 765 aaKnown RBP13.64□□□□□ -0.23
COL6A3-213ENST00000493475 FSCN1Q16658 493 aaKnown RBP13.64□□□□□ -0.23
COL6A3-213ENST00000493475 MCMDC2Q4G0Z9 681 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 IQSEC1Q6DN90 963 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 CCSAPQ6IQ19 270 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-213ENST00000493475 NSMFQ6X4W1 530 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 KCTD1Q719H9 257 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 FAM133AQ8N9E0 248 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 AGBL1Q96MI9 1066 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 GPHNQ9NQX3 736 aaPredicted RBP13.64□□□□□ -0.23
COL6A3-213ENST00000493475 METRNQ9UJH8 293 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 PRR12Q9ULL5 1215 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 MTMR7Q9Y216 660 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.64□□□□□ -0.23
COL6A3-213ENST00000493475 Q9Y3F1 56 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 PCDHB15Q9Y5E8 787 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 MYH4Q9Y623 1939 aa13.64□□□□□ -0.23
COL6A3-213ENST00000493475 TRIM6-TRIM34B2RNG4 842 aa13.63□□□□□ -0.23
COL6A3-213ENST00000493475 DNAJB2P25686 324 aa13.63□□□□□ -0.23
COL6A3-213ENST00000493475 RRP1P56182 461 aaKnown RBP13.63□□□□□ -0.23
COL6A3-213ENST00000493475 CNTN2Q02246 1040 aa13.63□□□□□ -0.23
COL6A3-213ENST00000493475 CTDSPL2Q05D32 466 aa13.63□□□□□ -0.23
COL6A3-213ENST00000493475 ALX1Q15699 326 aa13.63□□□□□ -0.23
COL6A3-213ENST00000493475 CCDC178Q5BJE1 867 aa13.63□□□□□ -0.23
COL6A3-213ENST00000493475 RRP12Q5JTH9 1297 aaKnown RBP13.63□□□□□ -0.23
COL6A3-213ENST00000493475 SYMPKQ92797 1274 aaKnown RBP13.63□□□□□ -0.23
COL6A3-213ENST00000493475 CYP39A1Q9NYL5 469 aa13.63□□□□□ -0.23
COL6A3-213ENST00000493475 TBX21Q9UL17 535 aa13.63□□□□□ -0.23
COL6A3-213ENST00000493475 SUPT20HL2P0C7V6 817 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 CPT1AP50416 773 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 CDK7P50613 346 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 NKX3-2P78367 333 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 RAB30Q15771 203 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 SYDE2Q5VT97 1194 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 MFSD6Q6ZSS7 791 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 RPUSD2Q8IZ73 545 aaKnown RBP13.62□□□□□ -0.23
COL6A3-213ENST00000493475 TIFAQ96CG3 184 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 TTC14Q96N46 770 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 GAS2L1Q99501 681 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-213ENST00000493475 TCP11L1Q9NUJ3 509 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 POLR3EQ9NVU0 708 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 MSRAQ9UJ68 235 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 ZMYM6O95789 1325 aa13.62□□□□□ -0.23
COL6A3-213ENST00000493475 PTPDC1A2A3K4 754 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 MYADML2A6NDP7 307 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 DYNC1LI2O43237 492 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-213ENST00000493475 ITGB8P26012 769 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 PDE1AP54750 535 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 HDAC1Q13547 482 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-213ENST00000493475 ITGA7Q13683 1181 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 CXCL17Q6UXB2 119 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 KIAA1211Q6ZU35 1233 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 FAM126BQ8IXS8 530 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 OTUD7AQ8TE49 926 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-213ENST00000493475 MYLIPQ8WY64 445 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 ESR2Q92731 530 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 CHMP4CQ96CF2 233 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 PPP1R12CQ9BZL4 782 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 RANBP17Q9H2T7 1088 aaKnown RBP13.61□□□□□ -0.23
COL6A3-213ENST00000493475 HIPK3Q9H422 1215 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 ZNF536O15090 1300 aa13.61□□□□□ -0.23
COL6A3-213ENST00000493475 SOWAHBA6NEL2 793 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 SMCHD1A6NHR9 2005 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 HIP1O00291 1037 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 NKRFO15226 690 aaKnown RBP eCLIP13.6□□□□□ -0.23
COL6A3-213ENST00000493475 CSF2RAP15509 400 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 GPATCH4Q5T3I0 446 aaKnown RBP13.6□□□□□ -0.23
COL6A3-213ENST00000493475 IQCA1Q86XH1 822 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 RILPL2Q969X0 211 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 FGD4Q96M96 766 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.6□□□□□ -0.23
COL6A3-213ENST00000493475 MAF1Q9H063 256 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 RWDD1Q9H446 243 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms