RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 AP5M1Q9H0R1 490 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 TRPV6Q9H1D0 765 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 EPHX3Q9H6B9 360 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 ACAD9Q9H845 621 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 MUC6Q6W4X9 2439 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 COL4A4P53420 1690 aaPredicted RBP17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 ZBBXA8MT70 800 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 TLL1O43897 1013 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 CA3P07451 260 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 ATP5JP18859 108 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 CNTN2Q02246 1040 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 NOL8Q76FK4 1167 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 RPAP2Q8IXW5 612 aaPredicted RBP17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 GMCL1P1Q8NEA9 526 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 SLC9A7Q96T83 725 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 HAUS7Q99871 368 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 A1CFQ9NQ94 594 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 BRWD1Q9NSI6 2320 aa17.04■□□□□ 0.32
PRPF40A-211ENST00000493468 SCN10AQ9Y5Y9 1956 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 GPR37L1O60883 481 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 SUPT20HL2P0C7V6 817 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 SMPD1P17405 629 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 TTLL4Q14679 1199 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 ZSCAN25Q6NSZ9 544 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 GIMAP6Q6P9H5 292 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 PHOSPHO2Q8TCD6 241 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 SCLYQ96I15 445 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 ALDH8A1Q9H2A2 487 aaPredicted RBP17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 MKNK2Q9HBH9 465 aa17.03■□□□□ 0.32
PRPF40A-211ENST00000493468 SOWAHBA6NEL2 793 aa17.02■□□□□ 0.32
PRPF40A-211ENST00000493468 RFC2P35250 354 aa17.02■□□□□ 0.32
PRPF40A-211ENST00000493468 TKFCQ3LXA3 575 aa17.02■□□□□ 0.32
PRPF40A-211ENST00000493468 IQSEC1Q6DN90 963 aa17.02■□□□□ 0.32
PRPF40A-211ENST00000493468 PUS7LQ9H0K6 701 aaKnown RBP17.02■□□□□ 0.32
PRPF40A-211ENST00000493468 BOLA2Q9H3K6 86 aa17.02■□□□□ 0.32
PRPF40A-211ENST00000493468 CLIP2Q9UDT6 1046 aa17.02■□□□□ 0.32
PRPF40A-211ENST00000493468 PLIN4Q96Q06 1357 aa17.02■□□□□ 0.31
PRPF40A-211ENST00000493468 DYNC1LI2O43237 492 aaPredicted RBP17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 CHGBP05060 677 aa17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 ACTN1P12814 892 aa17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 HLA-CQ95604 372 aa17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 HOMER2Q9NSB8 354 aa17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 RNF146Q9NTX7 359 aa17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 MTMR4Q9NYA4 1195 aa17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 COG6Q9Y2V7 657 aa17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 PTPRSQ13332 1948 aa17.01■□□□□ 0.31
PRPF40A-211ENST00000493468 ZNF536O15090 1300 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 EPOPA6NHQ4 379 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 RFXAPO00287 272 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 RAB11FIP3O75154 756 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 TTLL1O95922 423 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 BMP3P12645 472 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 PSMC6P62333 389 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 TAPT1Q6NXT6 567 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 MORC4Q8TE76 937 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 CEP95Q96GE4 821 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 STRBPQ96SI9 672 aaKnown RBP17■□□□□ 0.31
PRPF40A-211ENST00000493468 ZNF287Q9HBT7 754 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 VTA1Q9NP79 307 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 C11orf16Q9NQ32 467 aa17■□□□□ 0.31
PRPF40A-211ENST00000493468 TNKSO95271 1327 aa16.99■□□□□ 0.31
PRPF40A-211ENST00000493468 GSG1L2A8MUP6 293 aa16.99■□□□□ 0.31
PRPF40A-211ENST00000493468 HMMRO75330 724 aa16.99■□□□□ 0.31
PRPF40A-211ENST00000493468 STAT2P52630 851 aa16.99■□□□□ 0.31
PRPF40A-211ENST00000493468 TAP1Q03518 808 aa16.99■□□□□ 0.31
PRPF40A-211ENST00000493468 FAM160B2Q86V87 743 aa16.99■□□□□ 0.31
PRPF40A-211ENST00000493468 POLR3EQ9NVU0 708 aa16.99■□□□□ 0.31
PRPF40A-211ENST00000493468 TET1Q8NFU7 2136 aa16.99■□□□□ 0.31
PRPF40A-211ENST00000493468 CCER2I3L3R5 266 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 PITPNM1O00562 1244 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 PLA2G6O60733 806 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 DUSP28Q4G0W2 176 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 SLFN13Q68D06 897 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 FBXO16Q8IX29 292 aaPredicted RBP16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 LRRC47Q8N1G4 583 aaKnown RBP16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 CHURC1Q8WUH1 139 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 GMCL1Q96IK5 515 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 PDGFCQ9NRA1 345 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 TRMT13Q9NUP7 481 aaKnown RBP16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 LMCD1Q9NZU5 365 aa16.98■□□□□ 0.31
PRPF40A-211ENST00000493468 LOC102724159A0A0B4J2E5 919 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 KIF28PB7ZC32 967 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 TMEM232C9JQI7 657 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 PI4K2BG5E9Z4 385 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 CYP2C9P11712 490 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 PTGS1P23219 599 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 PURAQ00577 322 aaKnown RBP16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 PWP2Q15269 919 aaKnown RBP16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 KRT40Q6A162 431 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 DEFB128Q7Z7B8 93 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 HERC6Q8IVU3 1022 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 ZNF444Q8N0Y2 327 aaPredicted RBP16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 ARNTL2Q8WYA1 636 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 KHSRPQ92945 711 aaKnown RBP eCLIP16.97■□□□□ 0.312e-7■■■□□ 15.9
PRPF40A-211ENST00000493468 TRERF1Q96PN7 1200 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 CERS4Q9HA82 394 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 CYP39A1Q9NYL5 469 aa16.97■□□□□ 0.31
PRPF40A-211ENST00000493468 MINDY4BA8MYZ0 360 aa16.96■□□□□ 0.31
PRPF40A-211ENST00000493468 LPXNO60711 386 aa16.96■□□□□ 0.31
PRPF40A-211ENST00000493468 BAIAP3O94812 1187 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms