RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 BARHL2Q9NY43 387 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 SEC63Q9UGP8 760 aaKnown RBP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 CLIC4Q9Y696 253 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 COL11A1P12107 1806 aaPredicted RBP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 SMCHD1A6NHR9 2005 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 LETM1O95202 739 aaPredicted RBP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 NLRP5P59047 1200 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 IRX3P78415 501 aaPredicted RBP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 SREBF2Q12772 1141 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 PABPC4Q13310 644 aaKnown RBP eCLIP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 COG2Q14746 738 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 STK38Q15208 465 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 NPY5RQ15761 445 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 ADALQ6DHV7 355 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 BTNL9Q6UXG8 535 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 SLF1Q9BQI6 1058 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 CEP350Q5VT06 3117 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 SPTLC2O15270 562 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 PLA2G6O60733 806 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 TM4SF4P48230 202 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 NR5A1Q13285 461 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 SF3A1Q15459 793 aaKnown RBP18.21■□□□□ 0.51
SYNE1-227ENST00000489156 CCDC183Q5T5S1 534 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 SYDE2Q5VT97 1194 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 FAM160B2Q86V87 743 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 IFNL1Q8IU54 200 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 ADGRF4Q8IZF3 695 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 JMYQ8N9B5 988 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 PRPF38AQ8NAV1 312 aaKnown RBP18.21■□□□□ 0.51
SYNE1-227ENST00000489156 OXER1Q8TDS5 423 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 P2RX7Q99572 595 aaKnown RBP18.21■□□□□ 0.51
SYNE1-227ENST00000489156 PRR12Q9ULL5 1215 aa18.21■□□□□ 0.51
SYNE1-227ENST00000489156 PPP6R2O75170 966 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 CYP2C8P10632 490 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 ME1P48163 572 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 SNAP25P60880 206 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 PIBF1Q8WXW3 757 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 TNFRSF25Q93038 417 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 PPP1R9AQ9ULJ8 1098 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 A0A1W2PQ27 194 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 A0A1W2PQ64 194 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 A0A1W2PQD8 194 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 OSBPP22059 807 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 DSG3P32926 999 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 DAGLBQ8NCG7 672 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 ATG4CQ96DT6 458 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 JMJD4Q9H9V9 463 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 HOXC10Q9NYD6 342 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 PCDHA4Q9UN74 947 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 SLC45A1Q9Y2W3 748 aa18.2■□□□□ 0.5
SYNE1-227ENST00000489156 MORC2Q9Y6X9 1032 aaPredicted RBP18.2■□□□□ 0.5
SYNE1-227ENST00000489156 SPDYE16A6NNV3 312 aaPredicted RBP18.19■□□□□ 0.5
SYNE1-227ENST00000489156 STXBP3O00186 592 aa18.19■□□□□ 0.5
SYNE1-227ENST00000489156 MAP2K2P36507 400 aa18.19■□□□□ 0.5
SYNE1-227ENST00000489156 TOB1P50616 345 aaPredicted RBP18.19■□□□□ 0.5
SYNE1-227ENST00000489156 WWC2Q6AWC2 1192 aa18.19■□□□□ 0.5
SYNE1-227ENST00000489156 HEATR3Q7Z4Q2 680 aa18.19■□□□□ 0.5
SYNE1-227ENST00000489156 BICD2Q8TD16 824 aa18.19■□□□□ 0.5
SYNE1-227ENST00000489156 PCDHA7Q9UN72 937 aa18.19■□□□□ 0.5
SYNE1-227ENST00000489156 CEP131Q9UPN4 1083 aa18.19■□□□□ 0.5
SYNE1-227ENST00000489156 FSD2A1L4K1 749 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 TRAPPC10P48553 1259 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 HERVK_113P62684 666 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 PTPAQ15257 358 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 HOMER1Q86YM7 354 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 BLIDQ8IZY5 108 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 ZMYND12Q9H0C1 365 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 DDX19AQ9NUU7 478 aaKnown RBP18.18■□□□□ 0.5
SYNE1-227ENST00000489156 PNMA3Q9UL41 463 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 GOLGA6L3A6NEY3 463 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 POTEEQ6S8J3 1075 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 GPKOWQ92917 476 aaPredicted RBP eCLIP18.18■□□□□ 0.5
SYNE1-227ENST00000489156 MTMR8Q96EF0 704 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 PIGSQ96S52 555 aa18.18■□□□□ 0.5
SYNE1-227ENST00000489156 NOL7Q9UMY1 257 aaKnown RBP18.18■□□□□ 0.5
SYNE1-227ENST00000489156 MYPNQ86TC9 1320 aa18.17■□□□□ 0.5
SYNE1-227ENST00000489156 PNMA6FA0A0J9YX94 578 aa18.17■□□□□ 0.5
SYNE1-227ENST00000489156 ESYT2A0FGR8 921 aa18.17■□□□□ 0.5
SYNE1-227ENST00000489156 VWA5AO00534 786 aa18.17■□□□□ 0.5
SYNE1-227ENST00000489156 PEX10O60683 326 aa18.17■□□□□ 0.5
SYNE1-227ENST00000489156 GNA11P29992 359 aa18.17■□□□□ 0.5
SYNE1-227ENST00000489156 SMCR8Q8TEV9 937 aaPredicted RBP18.17■□□□□ 0.5
SYNE1-227ENST00000489156 ADAMTS5Q9UNA0 930 aa18.17■□□□□ 0.5
SYNE1-227ENST00000489156 BMP15O95972 392 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 LIG1P18858 919 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 TAF1CQ15572 869 aaPredicted RBP18.16■□□□□ 0.5
SYNE1-227ENST00000489156 CDC37Q16543 378 aaPredicted RBP18.16■□□□□ 0.5
SYNE1-227ENST00000489156 TYW1BQ6NUM6 668 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 REM2Q8IYK8 340 aaPredicted RBP18.16■□□□□ 0.5
SYNE1-227ENST00000489156 ZCCHC17Q9NP64 241 aaKnown RBP18.16■□□□□ 0.5
SYNE1-227ENST00000489156 M0R2N6 131 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 ZBTB5O15062 677 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 DEKP35659 375 aaKnown RBP18.16■□□□□ 0.5
SYNE1-227ENST00000489156 NAPAP54920 295 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 CCDC174Q6PII3 467 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 LRSAM1Q6UWE0 723 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 CCAR1Q8IX12 1150 aaKnown RBP18.16■□□□□ 0.5
SYNE1-227ENST00000489156 PARK7Q99497 189 aaKnown RBP18.16■□□□□ 0.5
SYNE1-227ENST00000489156 RANBP17Q9H2T7 1088 aaKnown RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms