RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 CPVLQ9H3G5 476 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 PSTPIP2Q9H939 334 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 CEP131Q9UPN4 1083 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 hCG_1642624A0A1W2PR95 340 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 BTBD18B2RXH4 712 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 PPP1R11O60927 126 aaPredicted RBP11.64□□□□□ -0.55
USP39-215ENST00000481409 BAG4O95429 457 aaKnown RBP11.64□□□□□ -0.55
USP39-215ENST00000481409 GUCY1B3Q02153 619 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 MOGSQ13724 837 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 NPY5RQ15761 445 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 MYSM1Q5VVJ2 828 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 PIBF1Q8WXW3 757 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 TNFRSF25Q93038 417 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 MS4A4AQ96JQ5 239 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 POLR3EQ9NVU0 708 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 KCNJ14Q9UNX9 436 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 RABGAP1Q9Y3P9 1069 aa11.64□□□□□ -0.55
USP39-215ENST00000481409 A0A0G2JMZ2 1700 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 ELP1O95163 1332 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 CCDC194A0A1B0GVG4 234 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 SPDYE16A6NNV3 312 aaPredicted RBP11.63□□□□□ -0.55
USP39-215ENST00000481409 YEATS4O95619 227 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 SLC25A27O95847 323 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 SLC10A3P09131 477 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 GJA5P36382 358 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 CLK2P49760 499 aaKnown RBP11.63□□□□□ -0.55
USP39-215ENST00000481409 ZNF157P51786 506 aaPredicted RBP11.63□□□□□ -0.55
USP39-215ENST00000481409 FMR1Q06787 632 aaKnown RBP eCLIP11.63□□□□□ -0.55
USP39-215ENST00000481409 OTUD7BQ6GQQ9 843 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 TYW1BQ6NUM6 668 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.63□□□□□ -0.55
USP39-215ENST00000481409 FERMT3Q86UX7 667 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 TMEM87AQ8NBN3 555 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 ZNF784Q8NCA9 323 aaPredicted RBP11.63□□□□□ -0.55
USP39-215ENST00000481409 REPS2Q8NFH8 660 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 COA7Q96BR5 231 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 TEX13BQ9BXU2 312 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 EHMT1Q9H9B1 1298 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 FBXO28Q9NVF7 368 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 RTEL1Q9NZ71 1219 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 FBXO40Q9UH90 709 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 CCPG1Q9ULG6 757 aa11.63□□□□□ -0.55
USP39-215ENST00000481409 ZNF536O15090 1300 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 CCL15-CCL14A0A0B4J2E2 113 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 GCLCP48506 637 aaPredicted RBP11.62□□□□□ -0.55
USP39-215ENST00000481409 NASPP49321 788 aaPredicted RBP11.62□□□□□ -0.55
USP39-215ENST00000481409 FOSBP53539 338 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 SREBF2Q12772 1141 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 NONOQ15233 471 aaKnown RBP eCLIP11.62□□□□□ -0.55
USP39-215ENST00000481409 CCL15Q16663 113 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 TREML2Q5T2D2 321 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 GPAT2Q6NUI2 795 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 RASAL3Q86YV0 1011 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 JMYQ8N9B5 988 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 CHST13Q8NET6 341 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 SHISA4Q96DD7 197 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 ATG4CQ96DT6 458 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 PARK7Q99497 189 aaKnown RBP11.62□□□□□ -0.55
USP39-215ENST00000481409 ASCC2Q9H1I8 757 aaPredicted RBP11.62□□□□□ -0.55
USP39-215ENST00000481409 GJB4Q9NTQ9 266 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 ZNF214Q9UL59 606 aaPredicted RBP11.62□□□□□ -0.55
USP39-215ENST00000481409 PCDHA6Q9UN73 950 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 PCDHA8Q9Y5H6 950 aa11.62□□□□□ -0.55
USP39-215ENST00000481409 KIF28PB7ZC32 967 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 GCOM1H8Y6P7 765 aaPredicted RBP11.61□□□□□ -0.55
USP39-215ENST00000481409 LAD1O00515 517 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 POLR2MP0CAP2 368 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 GCFC2P16383 781 aaKnown RBP11.61□□□□□ -0.55
USP39-215ENST00000481409 MCM4P33991 863 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 STAT3P40763 770 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 HSD17B4P51659 736 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 USP11P51784 963 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 HERVK_113P62684 666 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 DNM1Q05193 864 aaKnown RBP11.61□□□□□ -0.55
USP39-215ENST00000481409 NR5A1Q13285 461 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 CCDC174Q6PII3 467 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 MOXD1Q6UVY6 613 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 RIOX2Q8IUF8 465 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 SHCBP1Q8NEM2 672 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 KCNG4Q8TDN1 519 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.61□□□□□ -0.55
USP39-215ENST00000481409 CREBZFQ9NS37 354 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 RCOR1Q9UKL0 485 aa11.61□□□□□ -0.55
USP39-215ENST00000481409 RBBP6Q7Z6E9 1792 aaKnown RBP11.6□□□□□ -0.55
USP39-215ENST00000481409 SPDYE3A6NKU9 549 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 PDHXO00330 501 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 MEIS2O14770 477 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 DTNBO60941 627 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 PPP6R2O75170 966 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 CCNA1P78396 465 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 DGKZQ13574 1117 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 SKOR2Q2VWA4 1001 aaPredicted RBP11.6□□□□□ -0.55
USP39-215ENST00000481409 USH1GQ495M9 461 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 FOXD4L5Q5VV16 416 aaPredicted RBP11.6□□□□□ -0.55
USP39-215ENST00000481409 ANO1Q5XXA6 986 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 SNRNP48Q6IEG0 339 aaKnown RBP11.6□□□□□ -0.55
USP39-215ENST00000481409 NEK8Q86SG6 692 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 OXER1Q8TDS5 423 aa11.6□□□□□ -0.55
USP39-215ENST00000481409 FOXD4L4Q8WXT5 416 aaPredicted RBP11.6□□□□□ -0.55
USP39-215ENST00000481409 BRI3BPQ8WY22 251 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms