RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	ICAM1	P05362	532 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	PSMA5	P28066	241 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	SLC35G1	Q2M3R5	365 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	USH1G	Q495M9	461 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	MUM1L1	Q5H9M0	696 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095		Q6ZUG5	572 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	NBPF11	Q86T75	865 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	DPP9	Q86TI2	863 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	HOMER1	Q86YM7	354 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	TMTC2	Q8N394	836 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	CTCFL	Q8NI51	663 aa	Predicted RBP	11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	PXYLP1	Q8TE99	480 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	PIBF1	Q8WXW3	757 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	BRF1	Q92994	677 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	ZNF333	Q96JL9	665 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	TRERF1	Q96PN7	1200 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	ACAD9	Q9H845	621 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	JMJD4	Q9H9V9	463 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	FLRT1	Q9NZU1	646 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	BRPF3	Q9ULD4	1205 aa		11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.96	□□□□□ -0.49
HDAC6-222	ENST00000478095	KLF18	A0A0U1RQI7	1052 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	PLEKHA8P1	O95397	391 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	XRCC5	P13010	732 aa	Known RBP	11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	SOX10	P56693	466 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	APOBR	Q0VD83	1088 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	MTFR1	Q15390	333 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	QRICH1	Q2TAL8	776 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	APOA5	Q6Q788	366 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	RUFY3	Q7L099	469 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	SGMS1	Q86VZ5	419 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	ABRA	Q8N0Z2	381 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	CMTR1	Q8N1G2	835 aa	Known RBP	11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	ANKRD35	Q8N283	1001 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	CHST13	Q8NET6	341 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	DDX11	Q96FC9	970 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	ZSWIM6	Q9HCJ5	1215 aa		11.95	□□□□□ -0.5
HDAC6-222	ENST00000478095	NFIB	O00712	420 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	CYTH3	O43739	400 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	HMGCR	P04035	888 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	HOXC6	P09630	235 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	CALM1	P0DP23	149 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	CALM2	P0DP24	149 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	CALM3	P0DP25	149 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	KIF5B	P33176	963 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	UBXN2A	P68543	259 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	TKFC	Q3LXA3	575 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	NSMF	Q6X4W1	530 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	SYNE3	Q6ZMZ3	975 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	PIGS	Q96S52	555 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	A1CF	Q9NQ94	594 aa	Known RBP	11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	FBXO40	Q9UH90	709 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	CYP46A1	Q9Y6A2	500 aa		11.94	□□□□□ -0.5
HDAC6-222	ENST00000478095	PARP14	Q460N5	1801 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	GOLGA8A	A7E2F4	631 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	GOLGA8B	A8MQT2	603 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	ZBTB43	O43298	467 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	EIF5B	O60841	1220 aa	Known RBP	11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	PPP1R11	O60927	126 aa	Predicted RBP	11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	CYP2C19	P33261	490 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	ZNF792	Q3KQV3	632 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	FBXO11	Q86XK2	927 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	CCDC82	Q8N4S0	544 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	SRBD1	Q8N5C6	995 aa	Known RBP	11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	FANCB	Q8NB91	859 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	CLEC4D	Q8WXI8	215 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	RNF25	Q96BH1	459 aa	Predicted RBP	11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	MAML3	Q96JK9	1138 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	MAP3K14	Q99558	947 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	LARP6	Q9BRS8	491 aa	Known RBP	11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	TM6SF1	Q9BZW5	370 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	UNC93B1	Q9H1C4	597 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	SLC5A4	Q9NY91	659 aa		11.93	□□□□□ -0.5
HDAC6-222	ENST00000478095	hCG_1642624	A0A1W2PR95	340 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	ZBTB5	O15062	677 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	CCL5	P13501	91 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	ANAPC15	P60006	121 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	CNTN2	Q02246	1040 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	TOB2	Q14106	344 aa	Predicted RBP	11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	RTN1	Q16799	776 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	MFSD14C	Q5VZR4	134 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	SLC30A10	Q6XR72	485 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	TMTC3	Q6ZXV5	915 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	TRMT44	Q8IYL2	757 aa	Known RBP	11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	MTMR8	Q96EF0	704 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	PURB	Q96QR8	312 aa	Known RBP	11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	RNF208	Q9H0X6	261 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	RIOX1	Q9H6W3	641 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	PDRG1	Q9NUG6	133 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	CYP39A1	Q9NYL5	469 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	CENPF	P49454	3210 aa		11.92	□□□□□ -0.5
HDAC6-222	ENST00000478095	DNAJC25-GNG10	A0A024R161	153 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	PTPDC1	A2A3K4	754 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	POTEF	A5A3E0	1075 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	POTEB2	H3BUK9	544 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	CALML3	P27482	149 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	CDC27	P30260	824 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	GNAQ	P50148	359 aa		11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	METAP2	P50579	478 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
HDAC6-222	ENST00000478095	CACNB2	Q08289	660 aa	Predicted RBP	11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms