RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.25□□□□□ -0.45
COL27A1-204ENST00000477421 ZEB2O60315 1214 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 KRT13P13646 458 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 CXCR5P32302 372 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 KLHL30Q0D2K2 578 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 HAUS3Q68CZ6 603 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 NSMFQ6X4W1 530 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 HDXQ7Z353 690 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 LRP10Q7Z4F1 713 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 CCDC84Q86UT8 332 aaPredicted RBP12.25□□□□□ -0.45
COL27A1-204ENST00000477421 KANSL2Q9H9L4 492 aa12.25□□□□□ -0.45
COL27A1-204ENST00000477421 DLG5Q8TDM6 1919 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 EFCAB8A8MWE9 144 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L15C9J2P7 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L13C9JLJ4 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L11C9JVI0 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L18D6R9N7 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L22D6RA61 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L17D6RBQ6 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L19D6RCP7 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L20D6RJB6 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 BBOX1O75936 387 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 MYCLP12524 364 aaPredicted RBP12.24□□□□□ -0.45
COL27A1-204ENST00000477421 POLR2FP61218 127 aaKnown RBP12.24□□□□□ -0.45
COL27A1-204ENST00000477421 SETQ01105 290 aaPredicted RBP12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L24Q0WX57 530 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 SMC1AQ14683 1233 aaKnown RBP12.24□□□□□ -0.45
COL27A1-204ENST00000477421 SLC9C1Q4G0N8 1177 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 USP17L6PQ6QN14 398 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 AGXT2Q9BYV1 514 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 TRIM31Q9BZY9 425 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 SPATA31A1Q5TZJ5 1347 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 MXD3Q9BW11 206 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 GTPBP4Q9BZE4 634 aaKnown RBP12.24□□□□□ -0.45
COL27A1-204ENST00000477421 PANK4Q9NVE7 773 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 SMIM23A6NLE4 172 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 SORBS3O60504 671 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 ALDH1B1P30837 517 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 GJC1P36383 396 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 CLCN6P51797 869 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 GPSM2P81274 684 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 PTPAQ15257 358 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 KLHL7Q8IXQ5 586 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 P2RX5Q93086 422 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 WDR24Q96S15 920 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 GJA3Q9Y6H8 435 aa12.24□□□□□ -0.45
COL27A1-204ENST00000477421 TTLL1O95922 423 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 MMP10P09238 476 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 HOXA13P31271 388 aaPredicted RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 TOB1P50616 345 aaPredicted RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 TTLL12Q14166 644 aaPredicted RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 SF3B3Q15393 1217 aaKnown RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 GPR161Q8N6U8 529 aaKnown RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 TBC1D5Q92609 795 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 NUP58Q9BVL2 599 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 PEAK1Q9H792 1746 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 FGFR2P21802 821 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 TROAPQ12815 778 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 NTRK3Q16288 839 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 ARHGAP44Q17R89 818 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 C12orf60Q5U649 245 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 CERS3Q8IU89 383 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 JDP2Q8WYK2 163 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 ZNF512BQ96KM6 892 aaPredicted RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 LSM14BQ9BX40 385 aaKnown RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 GSTTP1A0A1W2PQM5 241 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 RPL13P26373 211 aaKnown RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 TCP11X2Q5H9J9 407 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 TMED8Q6PL24 325 aaPredicted RBP12.23□□□□□ -0.45
COL27A1-204ENST00000477421 TCHPQ9BT92 498 aa12.23□□□□□ -0.45
COL27A1-204ENST00000477421 CCDC169A6NNP5 214 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 HSF2BPO75031 334 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 RAD17O75943 681 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 CYP2J2P51589 502 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 DLGAP5Q15398 846 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 ZNF579Q8NAF0 562 aaKnown RBP12.22□□□□□ -0.45
COL27A1-204ENST00000477421 CCDC51Q96ER9 411 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 CSRNP1Q96S65 589 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 CDC23Q9UJX2 597 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 SHTN1A0MZ66 631 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 MFAP3LO75121 409 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 EPB41P11171 864 aaKnown RBP12.22□□□□□ -0.45
COL27A1-204ENST00000477421 HARSP12081 509 aaKnown RBP12.22□□□□□ -0.45
COL27A1-204ENST00000477421 VAV2P52735 878 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 ADAM9Q13443 819 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 GALNT17Q6IS24 598 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 SND1Q7KZF4 910 aaKnown RBP eCLIP12.22□□□□□ -0.45
COL27A1-204ENST00000477421 FBXO11Q86XK2 927 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 FOXP4Q8IVH2 680 aaPredicted RBP12.22□□□□□ -0.45
COL27A1-204ENST00000477421 UBR1Q8IWV7 1749 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 TLDC2A0PJX2 215 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 ATP2C2O75185 946 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 NEFHP12036 1026 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 ABCB4P21439 1286 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 PPP1R2P41236 205 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 RNF187Q5TA31 235 aaPredicted RBP12.22□□□□□ -0.45
COL27A1-204ENST00000477421 C8orf74Q6P047 294 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 PHF20Q9BVI0 1012 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 PARD6BQ9BYG5 372 aa12.22□□□□□ -0.45
COL27A1-204ENST00000477421 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms