RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 IL25Q9H293 177 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 ADD3Q9UEY8 706 aaKnown RBP14.13□□□□□ -0.15
SYNE1-223ENST00000476519 ATP11BQ9Y2G3 1177 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 WDR19Q8NEZ3 1342 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 MYH4Q9Y623 1939 aa14.12□□□□□ -0.15
SYNE1-223ENST00000476519 CST5P28325 142 aaPredicted RBP14.12□□□□□ -0.15
SYNE1-223ENST00000476519 GJA9P57773 515 aa14.12□□□□□ -0.15
SYNE1-223ENST00000476519 TRDNQ13061 729 aa14.12□□□□□ -0.15
SYNE1-223ENST00000476519 BAATQ14032 418 aaPredicted RBP14.12□□□□□ -0.15
SYNE1-223ENST00000476519 IQSEC1Q6DN90 963 aa14.12□□□□□ -0.15
SYNE1-223ENST00000476519 CCSAPQ6IQ19 270 aaPredicted RBP14.12□□□□□ -0.15
SYNE1-223ENST00000476519 NSMFQ6X4W1 530 aa14.12□□□□□ -0.15
SYNE1-223ENST00000476519 RGS22Q8NE09 1264 aa14.12□□□□□ -0.15
SYNE1-223ENST00000476519 MORC4Q8TE76 937 aa14.12□□□□□ -0.15
SYNE1-223ENST00000476519 UBE2OQ9C0C9 1292 aaKnown RBP14.12□□□□□ -0.15
SYNE1-223ENST00000476519 SYNRGQ9UMZ2 1314 aa14.12□□□□□ -0.15
SYNE1-223ENST00000476519 SGSM2O43147 1006 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 ACLYP53396 1101 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 TNFAIP2Q03169 654 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 TLE2Q04725 743 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 KCNA10Q16322 511 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 LRIT3Q3SXY7 679 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 ASPRV1Q53RT3 343 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 TDHQ8IZJ6 230 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 CLEC4DQ8WXI8 215 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 TOX2Q96NM4 488 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 UPF3AQ9H1J1 476 aaKnown RBP14.11□□□□□ -0.15
SYNE1-223ENST00000476519 Q9Y3F1 56 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 ZNFX1Q9P2E3 1918 aaKnown RBP14.11□□□□□ -0.15
SYNE1-223ENST00000476519 ELP1O95163 1332 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 TNKSO95271 1327 aa14.11□□□□□ -0.15
SYNE1-223ENST00000476519 COL11A1P12107 1806 aaPredicted RBP14.11□□□□□ -0.15
SYNE1-223ENST00000476519 A0A1W2PQ45 241 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-223ENST00000476519 A0A1W2PQY0 241 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 PARP1P09874 1014 aaKnown RBP14.1□□□□□ -0.15
SYNE1-223ENST00000476519 C6orf222P0C671 652 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-223ENST00000476519 GOLGA8HP0CJ92 632 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 MDM2Q00987 491 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-223ENST00000476519 PTH1RQ03431 593 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 TRIM60Q495X7 471 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 GNASQ5JWF2 1037 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 IFIT1BQ5T764 474 aaKnown RBP14.1□□□□□ -0.15
SYNE1-223ENST00000476519 GPR153Q6NV75 609 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 RNF207Q6ZRF8 634 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 ANKRD33Q7Z3H0 272 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 MAP4K1Q92918 833 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 LENG1Q96BZ8 264 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-223ENST00000476519 GLT1D1Q96MS3 346 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 MPHOSPH6Q99547 160 aaKnown RBP14.1□□□□□ -0.15
SYNE1-223ENST00000476519 UBA5Q9GZZ9 404 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 VTA1Q9NP79 307 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 STARD7Q9NQZ5 370 aa14.1□□□□□ -0.15
SYNE1-223ENST00000476519 PTPDC1A2A3K4 754 aa14.09□□□□□ -0.15
SYNE1-223ENST00000476519 B4DLN1 442 aa14.09□□□□□ -0.15
SYNE1-223ENST00000476519 NFIBO00712 420 aa14.09□□□□□ -0.15
SYNE1-223ENST00000476519 CYP21A2P08686 494 aa14.09□□□□□ -0.15
SYNE1-223ENST00000476519 MRPL12P52815 198 aaKnown RBP14.09□□□□□ -0.15
SYNE1-223ENST00000476519 TAPT1Q6NXT6 567 aa14.09□□□□□ -0.15
SYNE1-223ENST00000476519 NOL8Q76FK4 1167 aaKnown RBP14.09□□□□□ -0.15
SYNE1-223ENST00000476519 ADGRF4Q8IZF3 695 aa14.09□□□□□ -0.15
SYNE1-223ENST00000476519 DNERQ8NFT8 737 aa14.09□□□□□ -0.15
SYNE1-223ENST00000476519 GNEQ9Y223 722 aaKnown RBP14.09□□□□□ -0.15
SYNE1-223ENST00000476519 ASTN1O14525 1302 aa14.09□□□□□ -0.15
SYNE1-223ENST00000476519 SMCHD1A6NHR9 2005 aa14.08□□□□□ -0.15
SYNE1-223ENST00000476519 ADCY6O43306 1168 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 ASGR1P07306 291 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 RPS6P62753 249 aaKnown RBP14.08□□□□□ -0.16
SYNE1-223ENST00000476519 SEC23AQ15436 765 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 KIAA1211Q6ZU35 1233 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 CYB5R4Q7L1T6 521 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 NCOA7Q8NI08 942 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 PURBQ96QR8 312 aaKnown RBP14.08□□□□□ -0.16
SYNE1-223ENST00000476519 SEZ6LQ9BYH1 1024 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 AP5M1Q9H0R1 490 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 PDLIM7Q9NR12 457 aa14.08□□□□□ -0.16
SYNE1-223ENST00000476519 RBM47A0AV96 593 aaKnown RBP14.07□□□□□ -0.16
SYNE1-223ENST00000476519 ERICH2A1L162 156 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 MYADML2A6NDP7 307 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 DCDC2CA8MYV0 355 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 KIAA0355O15063 1070 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 CTAGE5O15320 804 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 ZEB2O60315 1214 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 CABYRO75952 493 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 CLTBP09497 229 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 SMPD1P17405 629 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 CALML3P27482 149 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 CDK7P50613 346 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 ALDH5A1P51649 535 aaPredicted RBP14.07□□□□□ -0.16
SYNE1-223ENST00000476519 SART3Q15020 963 aaKnown RBP14.07□□□□□ -0.16
SYNE1-223ENST00000476519 CDC37Q16543 378 aaPredicted RBP14.07□□□□□ -0.16
SYNE1-223ENST00000476519 CENPQQ7L2Z9 268 aaPredicted RBP14.07□□□□□ -0.16
SYNE1-223ENST00000476519 RALYLQ86SE5 291 aaKnown RBP14.07□□□□□ -0.16
SYNE1-223ENST00000476519 MCF2L2Q86YR7 1114 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 VTI1AQ96AJ9 217 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 JMJD4Q9H9V9 463 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 PRDM5Q9NQX1 630 aaPredicted RBP14.07□□□□□ -0.16
SYNE1-223ENST00000476519 PDGFCQ9NRA1 345 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 MRPL11Q9Y3B7 192 aaKnown RBP14.07□□□□□ -0.16
SYNE1-223ENST00000476519 ABCB11O95342 1321 aa14.07□□□□□ -0.16
SYNE1-223ENST00000476519 MROH7Q68CQ1 1323 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms