RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CNKSR3Q6P9H4 555 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 ATG9AQ7Z3C6 839 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 SPRED2Q7Z698 418 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 FRMD5Q7Z6J6 570 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 CAGE1Q8TC20 777 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 TEX13BQ9BXU2 312 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 LMAN2LQ9H0V9 348 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 ARHGEF10LQ9HCE6 1279 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 AATFQ9NY61 560 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP54-211ENST00000474929 DLL3Q9NYJ7 618 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 LRP2BPQ9P2M1 347 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 AKAP2Q9Y2D5 859 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 PTPRSQ13332 1948 aa9.84□□□□□ -0.83
USP54-211ENST00000474929 DNAJC25-GNG10A0A024R161 153 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 LOC730098B7Z3J9 87 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 H3BNC9 293 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 ICAM3P32942 547 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 BEX3Q00994 111 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 PTPN11Q06124 597 aaPredicted RBP9.83□□□□□ -0.84
USP54-211ENST00000474929 CTC1Q2NKJ3 1217 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP54-211ENST00000474929 ARMCX2Q7L311 632 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 SPATA5Q8NB90 893 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 AFAP1L1Q8TED9 768 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 RIPOR3Q96MK2 946 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 FBXO40Q9UH90 709 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 ADAMTS5Q9UNA0 930 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 NOD1Q9Y239 953 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 EP300Q09472 2414 aaPredicted RBP9.83□□□□□ -0.84
USP54-211ENST00000474929 CEP250Q9BV73 2442 aa9.83□□□□□ -0.84
USP54-211ENST00000474929 GRIN2DO15399 1336 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 MYH1P12882 1939 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 USP24Q9UPU5 2620 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 ADCY6O43306 1168 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 CYP2C9P11712 490 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 PTPN21Q16825 1174 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 BRDTQ58F21 947 aaPredicted RBP9.82□□□□□ -0.84
USP54-211ENST00000474929 TMEM179Q6ZVK1 233 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP54-211ENST00000474929 ZNF214Q9UL59 606 aaPredicted RBP9.82□□□□□ -0.84
USP54-211ENST00000474929 DMDP11532 3685 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 RAD50Q92878 1312 aa9.82□□□□□ -0.84
USP54-211ENST00000474929 DMXL1Q9Y485 3027 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 FASNP49327 2511 aaKnown RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 FSD2A1L4K1 749 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 VWA5AO00534 786 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 EYA4O95677 639 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 LMNAP02545 664 aaKnown RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 RFX5P48382 616 aaPredicted RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 CPT1AP50416 773 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 IRX5P78411 483 aaPredicted RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 GPM6BQ13491 265 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 IKBKEQ14164 716 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 EPC2Q52LR7 807 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 KIAA0319Q5VV43 1072 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 NFRKBQ6P4R8 1299 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 TMED8Q6PL24 325 aaPredicted RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 SP7Q8TDD2 431 aaPredicted RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 C17orf80Q9BSJ5 609 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 VCPKMTQ9H867 229 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 GPHNQ9NQX3 736 aaPredicted RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 TRMT13Q9NUP7 481 aaKnown RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 SAP30BPQ9UHR5 308 aaKnown RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 PPP1R9AQ9ULJ8 1098 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 HDAC5Q9UQL6 1122 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 GNEQ9Y223 722 aaKnown RBP9.81□□□□□ -0.84
USP54-211ENST00000474929 RWDD3Q9Y3V2 267 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 RALGAPA2Q2PPJ7 1873 aa9.81□□□□□ -0.84
USP54-211ENST00000474929 ASB14A6NK59 587 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 AMHP03971 560 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 ADORA1P30542 326 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 LTBRP36941 435 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 USP5P45974 858 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 NDUFV1P49821 464 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 PSMC6P62333 389 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 DEFB103AP81534 67 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 DMWDQ09019 674 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 SEPT2Q15019 361 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 CLUL1Q15846 466 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 ZBTB33Q86T24 672 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 FBXO11Q86XK2 927 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 UBALD2Q8IYN6 164 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 KCNG4Q8TDN1 519 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 HAUS7Q99871 368 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 PHF7Q9BWX1 381 aaPredicted RBP9.8□□□□□ -0.84
USP54-211ENST00000474929 HMG20BQ9P0W2 317 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 TMX2Q9Y320 296 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 VPS13AQ96RL7 3174 aa9.8□□□□□ -0.84
USP54-211ENST00000474929 MCM3APO60318 1980 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 MPHOSPH10O00566 681 aaKnown RBP9.79□□□□□ -0.84
USP54-211ENST00000474929 VAMP4O75379 141 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 UQCRFS1P1P0C7P4 283 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 ARID4AP29374 1257 aaPredicted RBP9.79□□□□□ -0.84
USP54-211ENST00000474929 MKRN4PQ13434 485 aaPredicted RBP9.79□□□□□ -0.84
USP54-211ENST00000474929 FAM47CQ5HY64 1035 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 GORABQ5T7V8 394 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 IQSEC1Q6DN90 963 aa9.79□□□□□ -0.84
USP54-211ENST00000474929 SNRNP48Q6IEG0 339 aaKnown RBP9.79□□□□□ -0.84
USP54-211ENST00000474929 ZC3H14Q6PJT7 736 aaKnown RBP9.79□□□□□ -0.84
USP54-211ENST00000474929 CCDC144CPQ8IYA2 1237 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms