RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 IKQ13123 557 aaPredicted RBP9.56□□□□□ -0.88
USP48-207ENST00000471752 FAM109BQ6ICB4 259 aaPredicted RBP9.56□□□□□ -0.88
USP48-207ENST00000471752 TAPT1Q6NXT6 567 aa9.56□□□□□ -0.88
USP48-207ENST00000471752 CWC27Q6UX04 472 aaKnown RBP9.56□□□□□ -0.88
USP48-207ENST00000471752 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP48-207ENST00000471752 CHST13Q8NET6 341 aa9.56□□□□□ -0.88
USP48-207ENST00000471752 UBA5Q9GZZ9 404 aa9.56□□□□□ -0.88
USP48-207ENST00000471752 NRBP1Q9UHY1 535 aa9.56□□□□□ -0.88
USP48-207ENST00000471752 FAM184BQ9ULE4 1060 aa9.56□□□□□ -0.88
USP48-207ENST00000471752 CNPY2Q9Y2B0 182 aa9.56□□□□□ -0.88
USP48-207ENST00000471752 REV3LO60673 3130 aa9.56□□□□□ -0.88
USP48-207ENST00000471752 SYNGAP1Q96PV0 1343 aa9.56□□□□□ -0.88
USP48-207ENST00000471752 C19orf67A6NJJ6 358 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 ASGR1P07306 291 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 SLC3A2P08195 630 aaKnown RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 C6orf222P0C671 652 aaPredicted RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 CDK7P50613 346 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 STAT2P52630 851 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 BAATQ14032 418 aaPredicted RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 COL9A3Q14050 684 aaPredicted RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 CCDC96Q2M329 555 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 LRRFIP1Q32MZ4 808 aaKnown RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 NSMFQ6X4W1 530 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 SKAP1Q86WV1 359 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 FBXO16Q8IX29 292 aaPredicted RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 CHURC1Q8WUH1 139 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 CLEC4DQ8WXI8 215 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 TTYH1Q9H313 450 aaPredicted RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 RWDD1Q9H446 243 aaPredicted RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 ACAD9Q9H845 621 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 ZNF287Q9HBT7 754 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 CYP39A1Q9NYL5 469 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 CTDP1Q9Y5B0 961 aaPredicted RBP9.55□□□□□ -0.88
USP48-207ENST00000471752 TTC28Q96AY4 2481 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 UMODL1Q5DID0 1318 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 CCDC171Q6TFL3 1326 aa9.55□□□□□ -0.88
USP48-207ENST00000471752 GRXCR1A8MXD5 290 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 DYNC1LI2O43237 492 aaPredicted RBP9.54□□□□□ -0.88
USP48-207ENST00000471752 PLA2G6O60733 806 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 DUSP11O75319 330 aaKnown RBP9.54□□□□□ -0.88
USP48-207ENST00000471752 ACRP10323 421 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 PDHBP11177 359 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 GSPT1P15170 499 aaKnown RBP9.54□□□□□ -0.88
USP48-207ENST00000471752 OAZ1P54368 228 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 GJA9P57773 515 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 PSMC6P62333 389 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 SLC35G1Q2M3R5 365 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 GNASQ5JWF2 1037 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 AKNAD1Q5T1N1 836 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 SYDE2Q5VT97 1194 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 C1orf53Q5VUE5 145 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 CXCL17Q6UXB2 119 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 BTNL9Q6UXG8 535 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 SLC30A10Q6XR72 485 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 ZNF467Q7Z7K2 595 aaPredicted RBP9.54□□□□□ -0.88
USP48-207ENST00000471752 RNF180Q86T96 592 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 FAM160B2Q86V87 743 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 SLC17A8Q8NDX2 589 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 COPS5Q92905 334 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 VWCEQ96DN2 955 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 LBHD1Q9BQE6 289 aaPredicted RBP9.54□□□□□ -0.88
USP48-207ENST00000471752 UPF3AQ9H1J1 476 aaKnown RBP9.54□□□□□ -0.88
USP48-207ENST00000471752 RANBP17Q9H2T7 1088 aaKnown RBP9.54□□□□□ -0.88
USP48-207ENST00000471752 OSBPL3Q9H4L5 887 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 SENP2Q9HC62 589 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 TMEM39AQ9NV64 488 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 CCPG1Q9ULG6 757 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 GNEQ9Y223 722 aaKnown RBP9.54□□□□□ -0.88
USP48-207ENST00000471752 MYH4Q9Y623 1939 aa9.54□□□□□ -0.88
USP48-207ENST00000471752 KIAA0355O15063 1070 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 KDM4AO75164 1064 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 CLTBP09497 229 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 TOP1P11387 765 aaKnown RBP9.53□□□□□ -0.88
USP48-207ENST00000471752 COPB2P35606 906 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 TNFAIP2Q03169 654 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 PTH1RQ03431 593 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 MFSD6Q6ZSS7 791 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 ANKRD33Q7Z3H0 272 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 DCAF4Q8WV16 495 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 VTI1AQ96AJ9 217 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 TRPV6Q9H1D0 765 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 SEMA6BQ9H3T3 888 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 ABHD16BQ9H3Z7 469 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 STARD7Q9NQZ5 370 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 TCP11L1Q9NUJ3 509 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 ZBTB47Q9UFB7 747 aaPredicted RBP9.53□□□□□ -0.88
USP48-207ENST00000471752 TBX21Q9UL17 535 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 SYNPO2Q9UMS6 1093 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 MCM3APO60318 1980 aa9.53□□□□□ -0.88
USP48-207ENST00000471752 B4E1Z4 1266 aa9.52□□□□□ -0.89
USP48-207ENST00000471752 ICAM1P05362 532 aa9.52□□□□□ -0.89
USP48-207ENST00000471752 SNHG28P0DPA3 235 aa9.52□□□□□ -0.89
USP48-207ENST00000471752 CYP2C18P33260 490 aa9.52□□□□□ -0.89
USP48-207ENST00000471752 ZNF543Q08ER8 600 aa9.52□□□□□ -0.89
USP48-207ENST00000471752 NOL8Q76FK4 1167 aaKnown RBP9.52□□□□□ -0.89
USP48-207ENST00000471752 CYB5R4Q7L1T6 521 aa9.52□□□□□ -0.89
USP48-207ENST00000471752 STAG2Q8N3U4 1231 aa9.52□□□□□ -0.89
USP48-207ENST00000471752 MSL3Q8N5Y2 521 aaKnown RBP9.52□□□□□ -0.89
USP48-207ENST00000471752 CDX2Q99626 313 aaPredicted RBP9.52□□□□□ -0.89
USP48-207ENST00000471752 TSEN34Q9BSV6 310 aaKnown RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms