RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 MBD4O95243 580 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 CRKP46108 304 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 GMPSP49915 693 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-208ENST00000470268 EIF6P56537 245 aaKnown RBP5.65□□□□□ -1.5
SF3B1-208ENST00000470268 RHBDL3P58872 404 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 FAM26DQ5JW98 314 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 ZSCAN25Q6NSZ9 544 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 ETFBKMTQ8IXQ9 262 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 RGL4Q8IZJ4 473 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 AGBL3Q8NEM8 1001 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 STRBPQ96SI9 672 aaKnown RBP5.65□□□□□ -1.5
SF3B1-208ENST00000470268 LSG1Q9H089 658 aaKnown RBP5.65□□□□□ -1.5
SF3B1-208ENST00000470268 ARMT1Q9H993 441 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 RRAGCQ9HB90 399 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 AATFQ9NY61 560 aaKnown RBP eCLIP5.65□□□□□ -1.5
SF3B1-208ENST00000470268 ATXN7L1Q9ULK2 861 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-208ENST00000470268 GJA3Q9Y6H8 435 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 ANKRD33BA6NCL7 494 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 SHISA8B8ZZ34 492 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 TGFBR3LH3BV60 316 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 SMIM22K7EJ46 135 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 ZBTB39O15060 712 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 HSPD1P10809 573 aaKnown RBP5.65□□□□□ -1.51
SF3B1-208ENST00000470268 ATP4AP20648 1035 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 BTDP43251 543 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 COL19A1Q14993 1142 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 TNIP1Q15025 636 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 IER5Q5VY09 327 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 HHIPL2Q6UWX4 724 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 GPC2Q8N158 579 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 SH3RF3Q8TEJ3 882 aaPredicted RBP5.65□□□□□ -1.51
SF3B1-208ENST00000470268 SDR42E1Q8WUS8 393 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 PRMT6Q96LA8 375 aaPredicted RBP5.65□□□□□ -1.51
SF3B1-208ENST00000470268 ZDHHC15Q96MV8 337 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 MRIQ9BWK5 157 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 EPB41L4AQ9HCS5 686 aaPredicted RBP5.65□□□□□ -1.51
SF3B1-208ENST00000470268 BRPF3Q9ULD4 1205 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 SBF1O95248 1867 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 CCDC171Q6TFL3 1326 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 MYO3BQ8WXR4 1341 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 RAD50Q92878 1312 aa5.65□□□□□ -1.51
SF3B1-208ENST00000470268 ADAMTSL1Q8N6G6 1762 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 MYH13Q9UKX3 1938 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 GSG1L2A8MUP6 293 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 IGSF3O75054 1194 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 EPS15P42566 896 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 ZNF280AP59817 542 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 GSTO1P78417 241 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 HDLBPQ00341 1268 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 LRRFIP1Q32MZ4 808 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 CFAP100Q494V2 611 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 EFHC2Q5JST6 749 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 CASC1Q6TDU7 716 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 SLCO4C1Q6ZQN7 724 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 NPAS4Q8IUM7 802 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 RUFY2Q8WXA3 655 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 DPF2Q92785 391 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 MAP4K1Q92918 833 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 TEKT1Q969V4 418 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 ZBED3Q96IU2 234 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 USP26Q9BXU7 913 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 CNOT7Q9UIV1 285 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 TAF6LQ9Y6J9 622 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 RBM47A0AV96 593 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 GLTPD2A6NH11 291 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 WNT10BO00744 389 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 WDHD1O75717 1129 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 FGAP02671 866 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 LDHCP07864 332 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 BMP4P12644 408 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 RPS12P25398 132 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 RBM5P52756 815 aaKnown RBP eCLIP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 CACNB3P54284 484 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 NFIAQ12857 509 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 COL9A3Q14050 684 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 NBPF9Q3BBW0 867 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 CDC42EP5Q6NZY7 148 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 Q8N3U1 123 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 SUSD3Q96L08 255 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 TDRD3Q9H7E2 651 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 MYOZ2Q9NPC6 264 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 DDX4Q9NQI0 724 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 FAM13BQ9NYF5 915 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 GPRC5DQ9NZD1 345 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 NOP53Q9NZM5 478 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 SCAF8Q9UPN6 1271 aaKnown RBP5.64□□□□□ -1.51
SF3B1-208ENST00000470268 SLC4A4Q9Y6R1 1079 aa5.64□□□□□ -1.51
SF3B1-208ENST00000470268 PSME4Q14997 1843 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 ASTN2O75129 1339 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-208ENST00000470268 CCDC88AQ3V6T2 1871 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 TIAM2Q8IVF5 1701 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 MAST2Q6P0Q8 1798 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 GNB5O14775 395 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 REC8O95072 547 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 COL8A1P27658 744 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 MSX1P28360 303 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 MZF1P28698 734 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-208ENST00000470268 USP5P45974 858 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 NECTIN1Q15223 517 aa5.63□□□□□ -1.51
SF3B1-208ENST00000470268 TBC1D10BQ4KMP7 808 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 186.1 ms