RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 USP17L18D6R9N7 530 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 USP17L22D6RA61 530 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 USP17L17D6RBQ6 530 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 USP17L19D6RCP7 530 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 USP17L20D6RJB6 530 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 F13A1P00488 732 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 SLC16A2P36021 539 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 HMGCS2P54868 508 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 AKAP17AQ02040 695 aaKnown RBP9.41□□□□□ -0.9
NPHP3-204ENST00000469232 KIF23Q02241 960 aaPredicted RBP9.41□□□□□ -0.9
NPHP3-204ENST00000469232 USP17L24Q0WX57 530 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 QRICH1Q2TAL8 776 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 SPRYD7Q5W111 196 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 SAPCD2Q86UD0 394 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 SPNS2Q8IVW8 549 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 SPICE1Q8N0Z3 855 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 CCDC82Q8N4S0 544 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 OXER1Q8TDS5 423 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 SLF1Q9BQI6 1058 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 FOXP1Q9H334 677 aaPredicted RBP9.41□□□□□ -0.9
NPHP3-204ENST00000469232 ZSCAN16Q9H4T2 348 aaPredicted RBP9.41□□□□□ -0.9
NPHP3-204ENST00000469232 SLC38A10Q9HBR0 1119 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 GJB4Q9NTQ9 266 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 FBXO28Q9NVF7 368 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 PNMA2Q9UL42 364 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 TLL2Q9Y6L7 1015 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 ZNF536O15090 1300 aa9.41□□□□□ -0.9
NPHP3-204ENST00000469232 PPFIA3O75145 1194 aa9.4□□□□□ -0.9
NPHP3-204ENST00000469232 CALML3P27482 149 aa9.4□□□□□ -0.9
NPHP3-204ENST00000469232 OAZ1P54368 228 aa9.4□□□□□ -0.9
NPHP3-204ENST00000469232 TRAF1Q13077 416 aa9.4□□□□□ -0.9
NPHP3-204ENST00000469232 SNAPC2Q13487 334 aa9.4□□□□□ -0.9
NPHP3-204ENST00000469232 TTLL12Q14166 644 aaPredicted RBP9.4□□□□□ -0.9
NPHP3-204ENST00000469232 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.4□□□□□ -0.9
NPHP3-204ENST00000469232 FASTKD5Q7L8L6 764 aaKnown RBP9.4□□□□□ -0.9
NPHP3-204ENST00000469232 ZNF784Q8NCA9 323 aaPredicted RBP9.4□□□□□ -0.9
NPHP3-204ENST00000469232 TNPO1Q92973 898 aaKnown RBP9.4□□□□□ -0.9
NPHP3-204ENST00000469232 RPAP3Q9H6T3 665 aaPredicted RBP9.4□□□□□ -0.9
NPHP3-204ENST00000469232 AGTPBP1Q9UPW5 1226 aa9.4□□□□□ -0.9
NPHP3-204ENST00000469232 MORC2Q9Y6X9 1032 aaPredicted RBP9.4□□□□□ -0.9
NPHP3-204ENST00000469232 hCG_1642624A0A1W2PR95 340 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 XBP1P17861 261 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 DGKZQ13574 1117 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 COG2Q14746 738 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 CDC37Q16543 378 aaPredicted RBP9.39□□□□□ -0.91
NPHP3-204ENST00000469232 ATL3Q6DD88 541 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 POTEEQ6S8J3 1075 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 BRAPQ7Z569 592 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 CCDC148Q8NFR7 591 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 CCDC12Q8WUD4 166 aaPredicted RBP9.39□□□□□ -0.91
NPHP3-204ENST00000469232 AMNQ9BXJ7 453 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 GLT8D2Q9H1C3 349 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 ZCCHC17Q9NP64 241 aaKnown RBP9.39□□□□□ -0.91
NPHP3-204ENST00000469232 TMOD4Q9NZQ9 345 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 VPS54Q9P1Q0 977 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 SEC63Q9UGP8 760 aaKnown RBP9.39□□□□□ -0.91
NPHP3-204ENST00000469232 MTMR7Q9Y216 660 aa9.39□□□□□ -0.91
NPHP3-204ENST00000469232 SPDYE16A6NNV3 312 aaPredicted RBP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 KIF28PB7ZC32 967 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 H3BQV1 296 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 PIK3CDO00329 1044 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 VWA5AO00534 786 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 OPLAHO14841 1288 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 ICAM1P05362 532 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 CLK2P49760 499 aaKnown RBP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 GTF2A2P52657 109 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 HUNKP57058 714 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 ZYXQ15942 572 aaKnown RBP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 TREML2Q5T2D2 321 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 IFFO2Q5TF58 517 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 OTUD7BQ6GQQ9 843 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 PAXIP1Q6ZW49 1069 aaPredicted RBP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 ANKRD23Q86SG2 305 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 RASAL3Q86YV0 1011 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 SAMD3Q8N6K7 520 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 RIC8AQ9NPQ8 531 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 HOXC10Q9NYD6 342 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 PCDHA4Q9UN74 947 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 VPS37CA5D8V6 355 aaPredicted RBP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 FAM155AB1AL88 458 aaPredicted RBP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 SLC10A3P09131 477 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 CETPP11597 493 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 TRIM29Q14134 588 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 RGMBQ6NW40 437 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 FBXO11Q86XK2 927 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 DIS3L2Q8IYB7 885 aaKnown RBP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 MB21D1Q8N884 522 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 BRI3BPQ8WY22 251 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 GPKOWQ92917 476 aaPredicted RBP eCLIP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 ZNF408Q9H9D4 720 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 VAT1LQ9HCJ6 419 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 ZNF214Q9UL59 606 aaPredicted RBP9.38□□□□□ -0.91
NPHP3-204ENST00000469232 KCNJ14Q9UNX9 436 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 ATP6V1DQ9Y5K8 247 aa9.38□□□□□ -0.91
NPHP3-204ENST00000469232 MYH15Q9Y2K3 1946 aa9.37□□□□□ -0.91
NPHP3-204ENST00000469232 ABCB11O95342 1321 aa9.37□□□□□ -0.91
NPHP3-204ENST00000469232 TMEM88BA6NKF7 163 aa9.37□□□□□ -0.91
NPHP3-204ENST00000469232 BTBD18B2RXH4 712 aa9.37□□□□□ -0.91
NPHP3-204ENST00000469232 ADAMTS3O15072 1205 aa9.37□□□□□ -0.91
NPHP3-204ENST00000469232 FLOT1O75955 427 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms