RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 MAMDC4Q6UXC1 1216 aa23.27■■□□□ 1.32
NPHP4-206ENST00000468253 RUFY3Q7L099 469 aa23.27■■□□□ 1.32
NPHP4-206ENST00000468253 FBXO11Q86XK2 927 aa23.27■■□□□ 1.32
NPHP4-206ENST00000468253 FAM133AQ8N9E0 248 aa23.27■■□□□ 1.32
NPHP4-206ENST00000468253 CLEC4DQ8WXI8 215 aa23.27■■□□□ 1.32
NPHP4-206ENST00000468253 TINF2Q9BSI4 451 aa23.27■■□□□ 1.32
NPHP4-206ENST00000468253 SPZ1Q9BXG8 430 aa23.27■■□□□ 1.32
NPHP4-206ENST00000468253 CENPFP49454 3210 aa23.27■■□□□ 1.32
NPHP4-206ENST00000468253 POTEB2H3BUK9 544 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 CYTH3O43739 400 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 CASTP20810 708 aaKnown RBP23.26■■□□□ 1.31
NPHP4-206ENST00000468253 GJA8P48165 433 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 FGD1P98174 961 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 SLC35G1Q2M3R5 365 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 APOA5Q6Q788 366 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 AMNQ9BXJ7 453 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 CYP39A1Q9NYL5 469 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 MRPL11Q9Y3B7 192 aaKnown RBP23.26■■□□□ 1.31
NPHP4-206ENST00000468253 CYP46A1Q9Y6A2 500 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 ABCB11O95342 1321 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 PLXNB2O15031 1838 aa23.26■■□□□ 1.31
NPHP4-206ENST00000468253 PNMA6FA0A0J9YX94 578 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 SGPL1O95470 568 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 CYP2C19P33261 490 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 SOX10P56693 466 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 EVCP57679 992 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 Q6ZUG5 572 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 TCEANC2Q96MN5 208 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 MYL10Q9BUA6 226 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.25■■□□□ 1.31
NPHP4-206ENST00000468253 RBM28Q9NW13 759 aaKnown RBP23.25■■□□□ 1.31
NPHP4-206ENST00000468253 BRPF3Q9ULD4 1205 aa23.25■■□□□ 1.31
NPHP4-206ENST00000468253 LOC102724159A0A0B4J2E5 919 aa23.24■■□□□ 1.31
NPHP4-206ENST00000468253 POTEFA5A3E0 1075 aa23.24■■□□□ 1.31
NPHP4-206ENST00000468253 ZBTB43O43298 467 aa23.24■■□□□ 1.31
NPHP4-206ENST00000468253 MYCP01106 439 aaPredicted RBP23.24■■□□□ 1.31
NPHP4-206ENST00000468253 CPA1P15085 419 aa23.24■■□□□ 1.31
NPHP4-206ENST00000468253 PWP2Q15269 919 aaKnown RBP23.24■■□□□ 1.31
NPHP4-206ENST00000468253 MCF2L2Q86YR7 1114 aa23.24■■□□□ 1.31
NPHP4-206ENST00000468253 SAMD3Q8N6K7 520 aa23.24■■□□□ 1.31
NPHP4-206ENST00000468253 SYNGAP1Q96PV0 1343 aa23.24■■□□□ 1.31
NPHP4-206ENST00000468253 COL11A1P12107 1806 aaPredicted RBP23.24■■□□□ 1.31
NPHP4-206ENST00000468253 SEC24BO95487 1268 aa23.23■■□□□ 1.31
NPHP4-206ENST00000468253 BAATQ14032 418 aaPredicted RBP23.23■■□□□ 1.31
NPHP4-206ENST00000468253 C8orf34Q49A92 452 aa23.23■■□□□ 1.31
NPHP4-206ENST00000468253 SRBD1Q8N5C6 995 aaKnown RBP23.23■■□□□ 1.31
NPHP4-206ENST00000468253 CRISPLD2Q9H0B8 497 aa23.23■■□□□ 1.31
NPHP4-206ENST00000468253 ALDH8A1Q9H2A2 487 aaPredicted RBP23.23■■□□□ 1.31
NPHP4-206ENST00000468253 MAP3K20Q9NYL2 800 aaKnown RBP23.23■■□□□ 1.31
NPHP4-206ENST00000468253 ZNF236Q9UL36 1845 aa23.23■■□□□ 1.31
NPHP4-206ENST00000468253 NFIBO00712 420 aa23.22■■□□□ 1.31
NPHP4-206ENST00000468253 MSCO60682 206 aa23.22■■□□□ 1.31
NPHP4-206ENST00000468253 EN2P19622 333 aaPredicted RBP23.22■■□□□ 1.31
NPHP4-206ENST00000468253 NSMFQ6X4W1 530 aa23.22■■□□□ 1.31
NPHP4-206ENST00000468253 U2AF1L4Q8WU68 220 aaKnown RBP23.22■■□□□ 1.31
NPHP4-206ENST00000468253 DEFB118Q96PH6 123 aa23.22■■□□□ 1.31
NPHP4-206ENST00000468253 PIGSQ96S52 555 aa23.22■■□□□ 1.31
NPHP4-206ENST00000468253 PCDHA1Q9Y5I3 950 aa23.22■■□□□ 1.31
NPHP4-206ENST00000468253 KLF18A0A0U1RQI7 1052 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 CCDC196A0A1B0GTZ2 297 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 ASB14A6NK59 587 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 CYBAP13498 195 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 CNTN2Q02246 1040 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 USH1GQ495M9 461 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 RNF207Q6ZRF8 634 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 TMTC3Q6ZXV5 915 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 MICU3Q86XE3 530 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 BRF1Q92994 677 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 RRP36Q96EU6 259 aaKnown RBP23.21■■□□□ 1.31
NPHP4-206ENST00000468253 FGD4Q96M96 766 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 ADD3Q9UEY8 706 aaKnown RBP23.21■■□□□ 1.31
NPHP4-206ENST00000468253 GTF3C3Q9Y5Q9 886 aa23.21■■□□□ 1.31
NPHP4-206ENST00000468253 SOWAHBA6NEL2 793 aa23.2■■□□□ 1.3
NPHP4-206ENST00000468253 CCND3P30281 292 aaPredicted RBP23.2■■□□□ 1.3
NPHP4-206ENST00000468253 GHRHRQ02643 423 aa23.2■■□□□ 1.3
NPHP4-206ENST00000468253 RTN1Q16799 776 aa23.2■■□□□ 1.3
NPHP4-206ENST00000468253 LHX8Q68G74 356 aa23.2■■□□□ 1.3
NPHP4-206ENST00000468253 TRPV1Q8NER1 839 aa23.2■■□□□ 1.3
NPHP4-206ENST00000468253 SEPT4O43236 478 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 PPP1R11O60927 126 aaPredicted RBP23.19■■□□□ 1.3
NPHP4-206ENST00000468253 PLEKHA8P1O95397 391 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 SNAI1O95863 264 aaPredicted RBP23.19■■□□□ 1.3
NPHP4-206ENST00000468253 TFRCP02786 760 aaKnown RBP23.19■■□□□ 1.3
NPHP4-206ENST00000468253 RXRAP19793 462 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 RPS6P62753 249 aaKnown RBP23.19■■□□□ 1.3
NPHP4-206ENST00000468253 APOBRQ0VD83 1088 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 DNERQ8NFT8 737 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 MORC4Q8TE76 937 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 FAM217BQ9NTX9 383 aaPredicted RBP23.19■■□□□ 1.3
NPHP4-206ENST00000468253 PDRG1Q9NUG6 133 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 OGDHLQ9ULD0 1010 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 CNPY2Q9Y2B0 182 aa23.19■■□□□ 1.3
NPHP4-206ENST00000468253 PTPDC1A2A3K4 754 aa23.18■■□□□ 1.3
NPHP4-206ENST00000468253 TAL1P17542 331 aaPredicted RBP23.18■■□□□ 1.3
NPHP4-206ENST00000468253 HOMER1Q86YM7 354 aa23.18■■□□□ 1.3
NPHP4-206ENST00000468253 CCDC144CPQ8IYA2 1237 aa23.18■■□□□ 1.3
NPHP4-206ENST00000468253 ANKLE1Q8NAG6 615 aa23.18■■□□□ 1.3
NPHP4-206ENST00000468253 ZNF274Q96GC6 653 aaPredicted RBP23.18■■□□□ 1.3
NPHP4-206ENST00000468253 ABHD16BQ9H3Z7 469 aa23.18■■□□□ 1.3
NPHP4-206ENST00000468253 SEC63Q9UGP8 760 aaKnown RBP23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms