RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 CCPG1Q9ULG6 757 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 MYH6P13533 1939 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 MSCO60682 206 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 ANTXR2P58335 489 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 TSGA10IPQ3SY00 556 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 CHST3Q7LGC8 479 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 ZNF467Q7Z7K2 595 aaPredicted RBP15.22■□□□□ 0.03
COL28A1-206ENST00000465339 ANKLE1Q8NAG6 615 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 UBA5Q9GZZ9 404 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 NRBP1Q9UHY1 535 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 TRPC6Q9Y210 931 aa15.22■□□□□ 0.03
COL28A1-206ENST00000465339 PFASO15067 1338 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 TNRC18O15417 2968 aaPredicted RBP15.21■□□□□ 0.03
COL28A1-206ENST00000465339 PRC1O43663 620 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 REC8O95072 547 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 CYBAP13498 195 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 CNGA1P29973 690 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 LHX8Q68G74 356 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 MAMDC4Q6UXC1 1216 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 ADGRF4Q8IZF3 695 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 TMEM87BQ96K49 555 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 OGDHLQ9ULD0 1010 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 PCDHB8Q9UN66 801 aa15.21■□□□□ 0.03
COL28A1-206ENST00000465339 WDR19Q8NEZ3 1342 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 KLRF2D3W0D1 207 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 POTEB2H3BUK9 544 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 FARP2O94887 1054 aaPredicted RBP15.2■□□□□ 0.02
COL28A1-206ENST00000465339 KRT32Q14532 448 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 MUM1L1Q5H9M0 696 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 UBE2Q1Q7Z7E8 422 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 CATIPQ7Z7H3 387 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 NEK1Q96PY6 1258 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 MAF1Q9H063 256 aa15.2■□□□□ 0.02
COL28A1-206ENST00000465339 A1CFQ9NQ94 594 aaKnown RBP15.2■□□□□ 0.02
COL28A1-206ENST00000465339 DDX20Q9UHI6 824 aaKnown RBP15.2■□□□□ 0.02
COL28A1-206ENST00000465339 SYNGAP1Q96PV0 1343 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 PALM3A6NDB9 673 aaPredicted RBP15.19■□□□□ 0.02
COL28A1-206ENST00000465339 SEPT4O43236 478 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 EPB41L2O43491 1005 aaKnown RBP15.19■□□□□ 0.02
COL28A1-206ENST00000465339 DHX16O60231 1041 aaKnown RBP15.19■□□□□ 0.02
COL28A1-206ENST00000465339 TROAPQ12815 778 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 GRM4Q14833 912 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 STAG2Q8N3U4 1231 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 FAM133AQ8N9E0 248 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 TRPV1Q8NER1 839 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 MAP3K14Q99558 947 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 CPVLQ9H3G5 476 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 JMJD4Q9H9V9 463 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 LY9Q9HBG7 655 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 SENP2Q9HC62 589 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 CYP39A1Q9NYL5 469 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 MAD2L2Q9UI95 211 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 CNPY2Q9Y2B0 182 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 FRMPD3Q5JV73 1810 aa15.19■□□□□ 0.02
COL28A1-206ENST00000465339 HMGB1P09429 215 aaKnown RBP15.18■□□□□ 0.02
COL28A1-206ENST00000465339 LIFRP42702 1097 aa15.18■□□□□ 0.02
COL28A1-206ENST00000465339 CDC37Q16543 378 aaPredicted RBP15.18■□□□□ 0.02
COL28A1-206ENST00000465339 PRAMEF19Q5SWL8 479 aa15.18■□□□□ 0.02
COL28A1-206ENST00000465339 NECAB2Q7Z6G3 386 aa15.18■□□□□ 0.02
COL28A1-206ENST00000465339 VAT1LQ9HCJ6 419 aa15.18■□□□□ 0.02
COL28A1-206ENST00000465339 MCM3APO60318 1980 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 CCDC69A6NI79 296 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 SH2B2O14492 632 aaPredicted RBP15.17■□□□□ 0.02
COL28A1-206ENST00000465339 DDAH1O94760 285 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 SNAI1O95863 264 aaPredicted RBP15.17■□□□□ 0.02
COL28A1-206ENST00000465339 HSPA4P34932 840 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 CNTN2Q02246 1040 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 TRAF1Q13077 416 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 NSMFQ6X4W1 530 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 NFXL1Q6ZNB6 911 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 DHX32Q7L7V1 743 aaKnown RBP15.17■□□□□ 0.02
COL28A1-206ENST00000465339 ZNF654Q8IZM8 581 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 RGS22Q8NE09 1264 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 KCNB2Q92953 911 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 PAWRQ96IZ0 340 aaKnown RBP15.17■□□□□ 0.02
COL28A1-206ENST00000465339 HTATIP2Q9BUP3 242 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 ABCB11O95342 1321 aa15.17■□□□□ 0.02
COL28A1-206ENST00000465339 LOC102724159A0A0B4J2E5 919 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 SOWAHBA6NEL2 793 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 ASB14A6NK59 587 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 ZNF865P0CJ78 1059 aaPredicted RBP15.16■□□□□ 0.02
COL28A1-206ENST00000465339 CALM1P0DP23 149 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 CALM2P0DP24 149 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 CALM3P0DP25 149 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 SMARCA1P28370 1054 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 KIF5BP33176 963 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 EXOSC10Q01780 885 aaKnown RBP15.16■□□□□ 0.02
COL28A1-206ENST00000465339 BAATQ14032 418 aaPredicted RBP15.16■□□□□ 0.02
COL28A1-206ENST00000465339 PWP2Q15269 919 aaKnown RBP15.16■□□□□ 0.02
COL28A1-206ENST00000465339 QRICH1Q2TAL8 776 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 FBXO11Q86XK2 927 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 ARRDC4Q8NCT1 418 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 CTCFLQ8NI51 663 aaPredicted RBP15.16■□□□□ 0.02
COL28A1-206ENST00000465339 CLEC4DQ8WXI8 215 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 MTMR8Q96EF0 704 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 FGD4Q96M96 766 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 ABHD16BQ9H3Z7 469 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 RIOX1Q9H6W3 641 aa15.16■□□□□ 0.02
COL28A1-206ENST00000465339 GPHNQ9NQX3 736 aaPredicted RBP15.16■□□□□ 0.02
COL28A1-206ENST00000465339 ADD3Q9UEY8 706 aaKnown RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms