RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 MUM1Q2TAK8 710 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 DCUN1D2Q6PH85 259 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 AFAP1L2Q8N4X5 818 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 FTOQ9C0B1 505 aaKnown RBP eCLIP20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 RIC8AQ9NPQ8 531 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 PASKQ96RG2 1323 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 SH2B2O14492 632 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 ARHGAP44Q17R89 818 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 SEPT14Q6ZU15 432 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 ANKRD13CQ8N6S4 541 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 KRT12Q99456 494 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 SOWAHDA6NJG2 315 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 MAN1A1P33908 653 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 WHAMMQ8TF30 809 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 M0R2C6 588 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 COBLO75128 1261 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 MAN2A1Q16706 1144 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 MAEAQ7L5Y9 396 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 CCDC13Q8IYE1 715 aa20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 MORC2Q9Y6X9 1032 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-204ENST00000463837 ZMYND10O75800 440 aa20.83■□□□□ 0.92
CCDC88B-204ENST00000463837 ABCB4P21439 1286 aa20.83■□□□□ 0.92
CCDC88B-204ENST00000463837 HNRNPH2P55795 449 aaKnown RBP20.83■□□□□ 0.92
CCDC88B-204ENST00000463837 C10orf76Q5T2E6 689 aa20.83■□□□□ 0.92
CCDC88B-204ENST00000463837 HEXIM1O94992 359 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 TRPC3Q13507 836 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 DPP8Q6V1X1 898 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 SMC1BQ8NDV3 1235 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 ALDH8A1Q9H2A2 487 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 CLGNO14967 610 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 NDUFA10O95299 355 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 LMNB1P20700 586 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 RASSF7Q02833 373 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 PCDHA12Q9UN75 941 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 PREX2Q70Z35 1606 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 CASQ2O14958 399 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 TRIM68Q6AZZ1 485 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 GABPB2Q8TAK5 448 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 PBKQ96KB5 322 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 GBP5Q96PP8 586 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 SLAIN2Q9P270 581 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 RFX7Q2KHR2 1363 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 EVI5O60447 810 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 CLTAP09496 248 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 EHHADHQ08426 723 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 ADAM9Q13443 819 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 EMBQ6PCB8 327 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 KIFC2Q96AC6 838 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 SLC39A2Q9NP94 309 aa20.82■□□□□ 0.92
CCDC88B-204ENST00000463837 TXNDC9O14530 226 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 ABCB6Q9NP58 842 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 KAT6BQ8WYB5 2073 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 GMNNO75496 209 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 LARGE2Q8N3Y3 721 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 ZNF526Q8TF50 670 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 PCDHA4Q9UN74 947 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 ATP10DQ9P241 1426 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 CCDC89Q8N998 374 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 UHMK1Q8TAS1 419 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 SPZ1Q9BXG8 430 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 YEATS2Q9ULM3 1422 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 MFAP3LO75121 409 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 IFT88Q13099 833 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 ACRBPQ8NEB7 543 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 EEF2KMTQ96G04 330 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 COL4A3BPQ9Y5P4 624 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 PDE8BO95263 885 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 LIFRP42702 1097 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 RESP18Q5W5W9 173 aa20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 SAMSN1Q9NSI8 373 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 INTS9Q9NV88 658 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-204ENST00000463837 MAGEA9P43362 315 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 TGFBRAP1Q8WUH2 860 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 EPB41L5Q9HCM4 733 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 CYP2E1P05181 493 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 ADD2P35612 726 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 MAPKAPK5Q8IW41 473 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 ADCY8P40145 1251 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 CC2D1AQ6P1N0 951 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 ADCY10Q96PN6 1610 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 PGRMC1O00264 195 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 RASA3Q14644 834 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 CDAN1Q8IWY9 1227 aa20.8■□□□□ 0.92
CCDC88B-204ENST00000463837 IQGAP3Q86VI3 1631 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 PLA2R1Q13018 1463 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 KLRF2D3W0D1 207 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 THAP12O43422 761 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 HSPA6P17066 643 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 EXOC3L4Q17RC7 722 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 FAM98CQ17RN3 349 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 ATP2A3Q93084 1043 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 TBC1D31Q96DN5 1066 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 ZDHHC9Q9Y397 364 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 GLE1Q53GS7 698 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 STK17AQ9UEE5 414 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 LAMC1P11047 1609 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 BAG6P46379 1132 aa20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 RNASELQ05823 741 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-204ENST00000463837 ADAT2Q7Z6V5 191 aaKnown RBP20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms