RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 NBPF11Q86T75 865 aa11.32□□□□□ -0.6
PTPRD-207ENST00000463477 RAB11FIP4Q86YS3 637 aa11.32□□□□□ -0.6
PTPRD-207ENST00000463477 DHX40Q8IX18 779 aaKnown RBP11.32□□□□□ -0.6
PTPRD-207ENST00000463477 PHKBQ93100 1093 aa11.32□□□□□ -0.6
PTPRD-207ENST00000463477 ZNF830Q96NB3 372 aaPredicted RBP11.32□□□□□ -0.6
PTPRD-207ENST00000463477 GJB4Q9NTQ9 266 aa11.32□□□□□ -0.6
PTPRD-207ENST00000463477 TMX2Q9Y320 296 aa11.32□□□□□ -0.6
PTPRD-207ENST00000463477 ATAD5Q96QE3 1844 aa11.32□□□□□ -0.6
PTPRD-207ENST00000463477 PTPRFP10586 1907 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 BECN2A8MW95 431 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 DYNC1I1O14576 645 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 MMP1P03956 469 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 PFKFB1P16118 471 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 NLRP12P59046 1061 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 LACTBP83111 547 aaPredicted RBP11.31□□□□□ -0.6
PTPRD-207ENST00000463477 SAFBQ15424 915 aaKnown RBP eCLIP11.31□□□□□ -0.6
PTPRD-207ENST00000463477 RESP18Q5W5W9 173 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 ZNF654Q8IZM8 581 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 AIFM3Q96NN9 605 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 FEZ1Q99689 392 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 RNF26Q9BY78 433 aaPredicted RBP11.31□□□□□ -0.6
PTPRD-207ENST00000463477 ASCC2Q9H1I8 757 aaPredicted RBP11.31□□□□□ -0.6
PTPRD-207ENST00000463477 CPA4Q9UI42 421 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 TUBE1Q9UJT0 475 aa11.31□□□□□ -0.6
PTPRD-207ENST00000463477 GNRH1P01148 92 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 CALM1P0DP23 149 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 CALM2P0DP24 149 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 CALM3P0DP25 149 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 RXRAP19793 462 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 GCLCP48506 637 aaPredicted RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 ICA1Q05084 483 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 GNL2Q13823 731 aaKnown RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 RILPL1Q5EBL4 403 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 OTOP1Q7RTM1 612 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 NOSTRINQ8IVI9 506 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 STK11IPQ8N1F8 1099 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 FANCBQ8NB91 859 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 SPC24Q8NBT2 197 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 CD99L2Q8TCZ2 262 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 SMCR8Q8TEV9 937 aaPredicted RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 UBAC1Q9BSL1 405 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 SLC26A6Q9BXS9 759 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 EFCC1Q9HA90 598 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 ARHGEF10LQ9HCE6 1279 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 INCENPQ9NQS7 918 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L15C9J2P7 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L13C9JLJ4 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L11C9JVI0 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L18D6R9N7 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L22D6RA61 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L17D6RBQ6 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L19D6RCP7 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L20D6RJB6 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 IKBKBO14920 756 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 RRP9O43818 475 aaKnown RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 ORC4O43929 436 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 PRDM1O75626 825 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 EEF2P13639 858 aaKnown RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 PTGS1P23219 599 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 GTF2F1P35269 517 aaKnown RBP eCLIP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 SYKP43405 635 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 CAP1Q01518 475 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 USP17L24Q0WX57 530 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 KIF22Q14807 665 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 ZRSR1Q15695 479 aaKnown RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 CATSPERGQ6ZRH7 1159 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 CCDC186Q7Z3E2 898 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 ZNF579Q8NAF0 562 aaKnown RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 MYRIPQ8NFW9 859 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 NEDD1Q8NHV4 660 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 P2RX7Q99572 595 aaKnown RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 SH2D4AQ9H788 454 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 RBM28Q9NW13 759 aaKnown RBP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 NYAP2Q9P242 653 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 CLIP2Q9UDT6 1046 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 PYCARDQ9ULZ3 195 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.3□□□□□ -0.6
PTPRD-207ENST00000463477 TRIM17Q9Y577 477 aa11.3□□□□□ -0.6
PTPRD-207ENST00000463477 UQCRHLA0A096LP55 91 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 IGKV6D-41A0A0C4DH26 115 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 SMTNL1A8MU46 457 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 UQCRHP07919 91 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 VCAM1P19320 739 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 IRX3P78415 501 aaPredicted RBP11.29□□□□□ -0.6
PTPRD-207ENST00000463477 ZYXQ15942 572 aaKnown RBP11.29□□□□□ -0.6
PTPRD-207ENST00000463477 FAM110CQ1W6H9 321 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 FBXO46Q6PJ61 603 aaPredicted RBP11.29□□□□□ -0.6
PTPRD-207ENST00000463477 SHC4Q6S5L8 630 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 DRC7Q8IY82 874 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 GTF3C2Q8WUA4 911 aaPredicted RBP11.29□□□□□ -0.6
PTPRD-207ENST00000463477 LPAR1Q92633 364 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 MKL1Q969V6 931 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 ABHD8Q96I13 439 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 MYL10Q9BUA6 226 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 VCPKMTQ9H867 229 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 IMPACTQ9P2X3 320 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 TNKSO95271 1327 aa11.29□□□□□ -0.6
PTPRD-207ENST00000463477 DDAH1O94760 285 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 HERVK_113P62684 666 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 TPM4P67936 248 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms