RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 IRF5Q13568 498 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 TMEM132BQ14DG7 1078 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 RTN1Q16799 776 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 Q3C1V9 767 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 SNRNP48Q6IEG0 339 aaKnown RBP8.96□□□□□ -0.98
USP4-207ENST00000462673 FBXO46Q6PJ61 603 aaPredicted RBP8.96□□□□□ -0.98
USP4-207ENST00000462673 LRSAM1Q6UWE0 723 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 TRIM22Q8IYM9 498 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 ADGRF4Q8IZF3 695 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 ANKRD35Q8N283 1001 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 CD99L2Q8TCZ2 262 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 PXYLP1Q8TE99 480 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 BRF1Q92994 677 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 IL17RAQ96F46 866 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 ZSCAN31Q96LW9 406 aaPredicted RBP8.96□□□□□ -0.98
USP4-207ENST00000462673 MOV10L1Q9BXT6 1211 aaKnown RBP8.96□□□□□ -0.98
USP4-207ENST00000462673 AGXT2Q9BYV1 514 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 GLT8D2Q9H1C3 349 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 RANBP17Q9H2T7 1088 aaKnown RBP8.96□□□□□ -0.98
USP4-207ENST00000462673 VAT1LQ9HCJ6 419 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 LMBRD1Q9NUN5 540 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 FBXO28Q9NVF7 368 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 SRRDQ9UH36 339 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 MAD2L2Q9UI95 211 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 CCPG1Q9ULG6 757 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 MRPL11Q9Y3B7 192 aaKnown RBP8.96□□□□□ -0.98
USP4-207ENST00000462673 ADGRA2Q96PE1 1338 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 CEP350Q5VT06 3117 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 LOC285556D6RIA3 1793 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 GOLGA8AA7E2F4 631 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 GOLGA8BA8MQT2 603 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 hCG_1984214I3L0E3 225 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 XBP1P17861 261 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 NCLP19338 710 aaKnown RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 PTPREP23469 700 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 SLC16A2P36021 539 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 UBXN2AP68543 259 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 APOA5Q6Q788 366 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 GPR142Q7Z601 462 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 MICU3Q86XE3 530 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 FBXO11Q86XK2 927 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 ZNF713Q8N859 430 aaPredicted RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 SLAIN1Q8ND83 568 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 RGS22Q8NE09 1264 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 CCDC12Q8WUD4 166 aaPredicted RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 TRERF1Q96PN7 1200 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 MMP19Q99542 508 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 SPZ1Q9BXG8 430 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 LRRC2Q9BYS8 371 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 UBA5Q9GZZ9 404 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 R3HDMLQ9H3Y0 253 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 RIOX1Q9H6W3 641 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 ACAD9Q9H845 621 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 RAVER2Q9HCJ3 691 aaKnown RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 BTBD7Q9P203 1132 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 BIN2Q9UBW5 565 aaPredicted RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 ADD3Q9UEY8 706 aaKnown RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 ZNF214Q9UL59 606 aaPredicted RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 DIS3Q9Y2L1 958 aaKnown RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 TAF6LQ9Y6J9 622 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 PFASO15067 1338 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 ABCB11O95342 1321 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 GREB1LQ9C091 1923 aaPredicted RBP8.95□□□□□ -0.98
USP4-207ENST00000462673 MYH4Q9Y623 1939 aa8.95□□□□□ -0.98
USP4-207ENST00000462673 LOC102724159A0A0B4J2E5 919 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 ALAS1P13196 640 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 APOBRQ0VD83 1088 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 MAP2K5Q13163 448 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 PWP2Q15269 919 aaKnown RBP8.94□□□□□ -0.98
USP4-207ENST00000462673 CDC37Q16543 378 aaPredicted RBP8.94□□□□□ -0.98
USP4-207ENST00000462673 MCTP2Q6DN12 878 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 TTBK2Q6IQ55 1244 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 CCDC174Q6PII3 467 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 OTOP1Q7RTM1 612 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 MSL3Q8N5Y2 521 aaKnown RBP8.94□□□□□ -0.98
USP4-207ENST00000462673 WASF1Q92558 559 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 CUL5Q93034 780 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 UPF3BQ9BZI7 483 aaKnown RBP8.94□□□□□ -0.98
USP4-207ENST00000462673 RBSNQ9H1K0 784 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 TXNRD2Q9NNW7 524 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 PTPN22Q9Y2R2 807 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 PCDHA1Q9Y5I3 950 aa8.94□□□□□ -0.98
USP4-207ENST00000462673 PTPRFP10586 1907 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 CNMDO75829 334 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 PTMAP06454 111 aaKnown RBP8.93□□□□□ -0.98
USP4-207ENST00000462673 PDIA3P30101 505 aaKnown RBP8.93□□□□□ -0.98
USP4-207ENST00000462673 FLT3LGP49771 235 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 SSRP1Q08945 709 aaKnown RBP8.93□□□□□ -0.98
USP4-207ENST00000462673 SLC9C1Q4G0N8 1177 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 MFSD14CQ5VZR4 134 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 FAM177A1Q8N128 213 aaPredicted RBP8.93□□□□□ -0.98
USP4-207ENST00000462673 STAG2Q8N3U4 1231 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 REPS2Q8NFH8 660 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 TCEANC2Q96MN5 208 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 TSPY26PQ9H489 355 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 JMJD4Q9H9V9 463 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 SH2B1Q9NRF2 756 aaPredicted RBP8.93□□□□□ -0.98
USP4-207ENST00000462673 FAM13BQ9NYF5 915 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 LIMCH1Q9UPQ0 1083 aa8.93□□□□□ -0.98
USP4-207ENST00000462673 ASB14A6NK59 587 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms