RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 PPIL2Q13356 520 aa18.06■□□□□ 0.48
SNX17-204ENST00000453453 FOXD4L6Q3SYB3 417 aaPredicted RBP18.06■□□□□ 0.48
SNX17-204ENST00000453453 LDLRAD1Q5T700 205 aa18.06■□□□□ 0.48
SNX17-204ENST00000453453 FOXD4L3Q6VB84 417 aaPredicted RBP18.06■□□□□ 0.48
SNX17-204ENST00000453453 DIS3L2Q8IYB7 885 aaKnown RBP18.06■□□□□ 0.48
SNX17-204ENST00000453453 KIFC2Q96AC6 838 aa18.06■□□□□ 0.48
SNX17-204ENST00000453453 SLC10A4Q96EP9 437 aa18.06■□□□□ 0.48
SNX17-204ENST00000453453 OTUD5Q96G74 571 aa18.06■□□□□ 0.48
SNX17-204ENST00000453453 SLF1Q9BQI6 1058 aa18.06■□□□□ 0.48
SNX17-204ENST00000453453 FOXP1Q9H334 677 aaPredicted RBP18.06■□□□□ 0.48
SNX17-204ENST00000453453 MRVI1Q9Y6F6 885 aa18.06■□□□□ 0.48
SNX17-204ENST00000453453 FAM193AP78312 1265 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 QRICH1Q2TAL8 776 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 SH3D19Q5HYK7 790 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 PLA2G4DQ86XP0 818 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 ZNF396Q96N95 335 aaPredicted RBP18.05■□□□□ 0.48
SNX17-204ENST00000453453 RPAP3Q9H6T3 665 aaPredicted RBP18.05■□□□□ 0.48
SNX17-204ENST00000453453 C6orf50Q9HD87 102 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 LOC285556D6RIA3 1793 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 CXCL11O14625 94 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 FLOT1O75955 427 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 GNA11P29992 359 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 C17orf53Q8N3J3 647 aaPredicted RBP18.05■□□□□ 0.48
SNX17-204ENST00000453453 PRPF38AQ8NAV1 312 aaKnown RBP18.05■□□□□ 0.48
SNX17-204ENST00000453453 AMNQ9BXJ7 453 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 CLSTN2Q9H4D0 955 aa18.05■□□□□ 0.48
SNX17-204ENST00000453453 CTDP1Q9Y5B0 961 aaPredicted RBP18.05■□□□□ 0.48
SNX17-204ENST00000453453 U2AF2P26368 475 aaKnown RBP eCLIP18.04■□□□□ 0.484e-7■■■■■ 30.7
SNX17-204ENST00000453453 FMR1Q06787 632 aaKnown RBP eCLIP18.04■□□□□ 0.48
SNX17-204ENST00000453453 ATL3Q6DD88 541 aa18.04■□□□□ 0.48
SNX17-204ENST00000453453 SAMD1Q6SPF0 538 aaPredicted RBP18.04■□□□□ 0.48
SNX17-204ENST00000453453 FBXO11Q86XK2 927 aa18.04■□□□□ 0.48
SNX17-204ENST00000453453 BICD2Q8TD16 824 aa18.04■□□□□ 0.48
SNX17-204ENST00000453453 OPTNQ96CV9 577 aa18.04■□□□□ 0.48
SNX17-204ENST00000453453 PRDM10Q9NQV6 1147 aa18.04■□□□□ 0.48
SNX17-204ENST00000453453 PCDHA4Q9UN74 947 aa18.04■□□□□ 0.48
SNX17-204ENST00000453453 ESYT2A0FGR8 921 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 BTBD18B2RXH4 712 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 ITGBL1O95965 494 aaPredicted RBP18.03■□□□□ 0.48
SNX17-204ENST00000453453 FDX1P10109 184 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 ZNF75DP51815 510 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 CBX1P83916 185 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 SARM1Q6SZW1 724 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 NOSTRINQ8IVI9 506 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 DAGLBQ8NCG7 672 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 CNKSR2Q8WXI2 1034 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 GLT8D2Q9H1C3 349 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 RANBP17Q9H2T7 1088 aaKnown RBP18.03■□□□□ 0.48
SNX17-204ENST00000453453 CFAP45Q9UL16 551 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 PARP14Q460N5 1801 aa18.03■□□□□ 0.48
SNX17-204ENST00000453453 SMCO2A6NFE2 343 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 KIF28PB7ZC32 967 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L15C9J2P7 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L13C9JLJ4 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L11C9JVI0 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L18D6R9N7 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L22D6RA61 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L17D6RBQ6 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L19D6RCP7 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L20D6RJB6 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 ADCY7P51828 1080 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 USP17L24Q0WX57 530 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 DGKZQ13574 1117 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 CREBRFQ8IUR6 639 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 BLIDQ8IZY5 108 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 PROCA1Q8NCQ7 364 aaPredicted RBP18.02■□□□□ 0.48
SNX17-204ENST00000453453 COA7Q96BR5 231 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 ZMYND12Q9H0C1 365 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 TNMDQ9H2S6 317 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 FBXO28Q9NVF7 368 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 KCNH4Q9UQ05 1017 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 PCDHA1Q9Y5I3 950 aa18.02■□□□□ 0.48
SNX17-204ENST00000453453 A0A0G2JLL6 359 aaPredicted RBP18.01■□□□□ 0.47
SNX17-204ENST00000453453 IRF6O14896 467 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 NCBP1Q09161 790 aaKnown RBP18.01■□□□□ 0.47
SNX17-204ENST00000453453 GADL1Q6ZQY3 521 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 PRRT2Q7Z6L0 340 aaPredicted RBP18.01■□□□□ 0.47
SNX17-204ENST00000453453 SHISA4Q96DD7 197 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 KCND1Q9NSA2 647 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 PNMA2Q9UL42 364 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 PPP1R9AQ9ULJ8 1098 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 PPP1R11O60927 126 aaPredicted RBP18.01■□□□□ 0.47
SNX17-204ENST00000453453 ZBED4O75132 1171 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 PTGS1P23219 599 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 SNAP25P60880 206 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 MYSM1Q5VVJ2 828 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 TYW1BQ6NUM6 668 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 FAM173BQ6P4H8 233 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 FASTKD5Q7L8L6 764 aaKnown RBP18.01■□□□□ 0.47
SNX17-204ENST00000453453 SMC1BQ8NDV3 1235 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 OXER1Q8TDS5 423 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 TSC1Q92574 1164 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 CUL5Q93034 780 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 CBX8Q9HC52 389 aa18.01■□□□□ 0.47
SNX17-204ENST00000453453 MYPNQ86TC9 1320 aa18■□□□□ 0.47
SNX17-204ENST00000453453 CTAGE5O15320 804 aa18■□□□□ 0.47
SNX17-204ENST00000453453 MRPL12P52815 198 aaKnown RBP18■□□□□ 0.47
SNX17-204ENST00000453453 PLCB2Q00722 1185 aa18■□□□□ 0.47
SNX17-204ENST00000453453 NR5A1Q13285 461 aa18■□□□□ 0.47
SNX17-204ENST00000453453 SNAPC2Q13487 334 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms