RNA–Protein interactions for RNA: ENST00000448012.6

NPIPB3-202, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 1 (best) BASIC

Gene NPIPB3, Length 1,216 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-202ENST00000448012 CNTN2Q02246 1040 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 TNFAIP2Q03169 654 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 SART3Q15020 963 aaKnown RBP12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 CCDC144BQ3MJ40 725 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 TRIM60Q495X7 471 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 ASPRV1Q53RT3 343 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 C1orf53Q5VUE5 145 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 KIAA1211Q6ZU35 1233 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 RALYLQ86SE5 291 aaKnown RBP12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 CYP39A1Q9NYL5 469 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 MYH4Q9Y623 1939 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 SYNRGQ9UMZ2 1314 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 LOC102724159A0A0B4J2E5 919 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 A0A1W2PQ45 241 aaPredicted RBP12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 A0A1W2PQY0 241 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 PARP1P09874 1014 aaKnown RBP12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 PDE4AP27815 886 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 ACLYP53396 1101 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 PWP2Q15269 919 aaKnown RBP12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 MUM1L1Q5H9M0 696 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 GNASQ5JWF2 1037 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 IFIT1BQ5T764 474 aaKnown RBP12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 RASGRP2Q7LDG7 609 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 LENG1Q96BZ8 264 aaPredicted RBP12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 TNKSO95271 1327 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 MROH7Q68CQ1 1323 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 BRCA2P51587 3418 aa12.82□□□□□ -0.36
NPIPB3-202ENST00000448012 SOWAHBA6NEL2 793 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 PQBP1O60828 265 aaKnown RBP12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 ADAMTS4O75173 837 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 CLTBP09497 229 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 CALML3P27482 149 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 TLE2Q04725 743 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 BAATQ14032 418 aaPredicted RBP12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 SNX17Q15036 470 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 KCNA10Q16322 511 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 IQSEC1Q6DN90 963 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 RNF207Q6ZRF8 634 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 VTA1Q9NP79 307 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 ZSWIM5Q9P217 1185 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 MKI67P46013 3256 aaKnown RBP12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 WDR19Q8NEZ3 1342 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 COL11A1P12107 1806 aaPredicted RBP12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 PARP14Q460N5 1801 aa12.81□□□□□ -0.36
NPIPB3-202ENST00000448012 TLR3O15455 904 aaKnown RBP12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 GOLGA8HP0CJ92 632 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 SNHG28P0DPA3 235 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 GSPT1P15170 499 aaKnown RBP12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 RAG1P15918 1043 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 CHMLP26374 656 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 CST5P28325 142 aaPredicted RBP12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 GJA9P57773 515 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 PDE4DQ08499 809 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 TRAF1Q13077 416 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 USH1GQ495M9 461 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 BRDTQ58F21 947 aaPredicted RBP12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 EEPD1Q7L9B9 569 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 TLK2Q86UE8 772 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 MCF2L2Q86YR7 1114 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 ANKS1AQ92625 1134 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 TMEM39AQ9NV64 488 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 ELP1O95163 1332 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 CEP290O15078 2479 aa12.8□□□□□ -0.36
NPIPB3-202ENST00000448012 A0A0U1RQG5 324 aaPredicted RBP12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 NFIBO00712 420 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 CABYRO75952 493 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 ASGR1P07306 291 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 CDC37Q16543 378 aaPredicted RBP12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 LRIT3Q3SXY7 679 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 ENAHQ8N8S7 591 aaPredicted RBP12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 KLHDC9Q8NEP7 349 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 NCOA7Q8NI08 942 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 FGD4Q96M96 766 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 UBA5Q9GZZ9 404 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 MAF1Q9H063 256 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 UPF3AQ9H1J1 476 aaKnown RBP12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 PDLIM7Q9NR12 457 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 MRPL11Q9Y3B7 192 aaKnown RBP12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 ABCB11O95342 1321 aa12.79□□□□□ -0.36
NPIPB3-202ENST00000448012 IFIT3O14879 490 aaKnown RBP12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 DYNC1LI2O43237 492 aaPredicted RBP12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 ALDH5A1P51649 535 aaPredicted RBP12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 FSCN1Q16658 493 aaKnown RBP12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 GPR153Q6NV75 609 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 CASC1Q6TDU7 716 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 FBXO11Q86XK2 927 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 FBXO16Q8IX29 292 aaPredicted RBP12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 DNERQ8NFT8 737 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 BADQ92934 168 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 TOX2Q96NM4 488 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 SEZ6LQ9BYH1 1024 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 VAT1LQ9HCJ6 419 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 GPHNQ9NQX3 736 aaPredicted RBP12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 Q9Y3F1 56 aa12.78□□□□□ -0.36
NPIPB3-202ENST00000448012 RPS6P62753 249 aaKnown RBP12.77□□□□□ -0.37
NPIPB3-202ENST00000448012 WTAPQ15007 396 aa12.77□□□□□ -0.37
NPIPB3-202ENST00000448012 SLC30A10Q6XR72 485 aa12.77□□□□□ -0.37
NPIPB3-202ENST00000448012 ANKRD33Q7Z3H0 272 aa12.77□□□□□ -0.37
NPIPB3-202ENST00000448012 CATIPQ7Z7H3 387 aa12.77□□□□□ -0.37
NPIPB3-202ENST00000448012 ADGRF4Q8IZF3 695 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms