RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 PHLPP1O60346 1717 aa21.3■■□□□ 1
HMGA1-205ENST00000447654 PDE2AO00408 941 aaPredicted RBP21.3■■□□□ 1
HMGA1-205ENST00000447654 ITPK1Q13572 414 aa21.3■■□□□ 1
HMGA1-205ENST00000447654 CCDC170Q8IYT3 715 aa21.3■■□□□ 1
HMGA1-205ENST00000447654 FOXP2O15409 715 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 RNF113AO15541 343 aaKnown RBP21.29■■□□□ 1
HMGA1-205ENST00000447654 SRGAP2O75044 1071 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 HSPD1P10809 573 aaKnown RBP21.29■■□□□ 1
HMGA1-205ENST00000447654 FERP16591 822 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 ITGB3BPQ13352 177 aaPredicted RBP21.29■■□□□ 1
HMGA1-205ENST00000447654 CUL4BQ13620 913 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 LDHAL6AQ6ZMR3 332 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 VPS37DQ86XT2 251 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 ZNF34Q8IZ26 560 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 CACNA2D3Q8IZS8 1091 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 SH2D3CQ8N5H7 860 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 KLHL23Q8NBE8 558 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 AIDAQ96BJ3 306 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 PURBQ96QR8 312 aaKnown RBP21.29■■□□□ 1
HMGA1-205ENST00000447654 NUP88Q99567 741 aaPredicted RBP21.29■■□□□ 1
HMGA1-205ENST00000447654 CPLX1O14810 134 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 KRT9P35527 623 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 C2orf54Q08AI8 447 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 SLC30A9Q6PML9 568 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 NOP53Q9NZM5 478 aaKnown RBP21.29■■□□□ 1
HMGA1-205ENST00000447654 FBXO3Q9UK99 471 aa21.29■■□□□ 1
HMGA1-205ENST00000447654 MYH14Q7Z406 1995 aaKnown RBP21.28■■□□□ 1
HMGA1-205ENST00000447654 WDR19Q8NEZ3 1342 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 CFAP73A6NFT4 308 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 KCNQ2O43526 872 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 SSBP05455 408 aaKnown RBP eCLIP21.28■■□□□ 1
HMGA1-205ENST00000447654 PAEPP09466 180 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 PEX19P40855 299 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 ZAP70P43403 619 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 SEC24CP53992 1094 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 ACCSLQ4AC99 568 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 RPUSD2Q8IZ73 545 aaKnown RBP21.28■■□□□ 1
HMGA1-205ENST00000447654 VGLL2Q8N8G2 317 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.28■■□□□ 11e-6■■■■■ 56.2
HMGA1-205ENST00000447654 CNKSR1Q969H4 720 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 SPATA31A5Q5VU36 1347 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 SPATA31A7Q8IWB4 1347 aa21.28■■□□□ 1
HMGA1-205ENST00000447654 ZNF233A6NK53 670 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 ERVV-1B6SEH8 477 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 FOXN1O15353 648 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 TRAPPC3O43617 180 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 COQ9O75208 318 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 IBSPP21815 317 aaPredicted RBP21.27■■□□□ 1
HMGA1-205ENST00000447654 CRKLP46109 303 aaKnown RBP21.27■■□□□ 1
HMGA1-205ENST00000447654 METTL24Q5JXM2 366 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 CWF19L1Q69YN2 538 aaKnown RBP21.27■■□□□ 1
HMGA1-205ENST00000447654 KIRREL3Q8IZU9 778 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.27■■□□□ 1
HMGA1-205ENST00000447654 NUP58Q9BVL2 599 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 TSGA10Q9BZW7 698 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 DMGDHQ9UI17 866 aaKnown RBP21.27■■□□□ 1
HMGA1-205ENST00000447654 MYH3P11055 1940 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 DDX60Q8IY21 1712 aaKnown RBP21.27■■□□□ 1
HMGA1-205ENST00000447654 SH2B2O14492 632 aaPredicted RBP21.27■■□□□ 1
HMGA1-205ENST00000447654 CAND2O75155 1236 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 ROR2Q01974 943 aaKnown RBP21.27■■□□□ 1
HMGA1-205ENST00000447654 BLMHQ13867 455 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 LRIG3Q6UXM1 1119 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 CREG2Q8IUH2 290 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 IFT20Q8IY31 132 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 ZFAND2BQ8WV99 257 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 CCT6BQ92526 530 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 SEC16BQ96JE7 1060 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 DNAJC7Q99615 494 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 LRRC1Q9BTT6 524 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 SNX12Q9UMY4 172 aa21.27■■□□□ 1
HMGA1-205ENST00000447654 PPIP5K2O43314 1243 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 CDKL5O76039 1030 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 MYO1EQ12965 1108 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 SUSD4Q5VX71 490 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 SPATA4Q8NEY3 305 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 SENP2Q9HC62 589 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 BCL9LQ86UU0 1499 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 C4AP0C0L4 1744 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 C4BP0C0L5 1744 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 LOC102724428A0A0B4J2F2 783 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 A6NHS1 94 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 IDEP14735 1019 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 MCAMP43121 646 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 GCLCP48506 637 aaPredicted RBP21.26■□□□□ 0.99
HMGA1-205ENST00000447654 SIK1P57059 783 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 HERVK_113P62684 666 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 PAK2Q13177 524 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 TSR1Q2NL82 804 aaKnown RBP21.26■□□□□ 0.99
HMGA1-205ENST00000447654 KCTD16Q68DU8 428 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 HVCN1Q96D96 273 aa21.26■□□□□ 0.99
HMGA1-205ENST00000447654 THOC1Q96FV9 657 aaKnown RBP21.26■□□□□ 0.99
HMGA1-205ENST00000447654 SNAP23O00161 211 aa21.25■□□□□ 0.99
HMGA1-205ENST00000447654 ABLIM1O14639 778 aa21.25■□□□□ 0.99
HMGA1-205ENST00000447654 ANP32DO95626 131 aa21.25■□□□□ 0.99
HMGA1-205ENST00000447654 KRT14P02533 472 aa21.25■□□□□ 0.99
HMGA1-205ENST00000447654 TCP1P17987 556 aaKnown RBP21.25■□□□□ 0.99
HMGA1-205ENST00000447654 CYLC1P35663 651 aaPredicted RBP21.25■□□□□ 0.99
HMGA1-205ENST00000447654 PDIA5Q14554 519 aa21.25■□□□□ 0.99
HMGA1-205ENST00000447654 TBC1D25Q3MII6 688 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms