RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SCN5AQ14524 2016 aa14.23□□□□□ -0.13
PTPRF-208ENST00000437607 MOXD2PA6NHM9 499 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 RAG1P15918 1043 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 CASTP20810 708 aaKnown RBP14.22□□□□□ -0.13
PTPRF-208ENST00000437607 SLC4A3P48751 1232 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 FPGSQ05932 587 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 TRDNQ13061 729 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 ZNF467Q7Z7K2 595 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-208ENST00000437607 TBC1D10CQ8IV04 446 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 KIFC2Q96AC6 838 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 IL17RAQ96F46 866 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 DDX11Q96FC9 970 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 CEP95Q96GE4 821 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 RNPC3Q96LT9 517 aaKnown RBP14.22□□□□□ -0.13
PTPRF-208ENST00000437607 KATNBL1Q9H079 304 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 MTMR4Q9NYA4 1195 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 ZHX1Q9UKY1 873 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-208ENST00000437607 TBX21Q9UL17 535 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 PLIN4Q96Q06 1357 aa14.22□□□□□ -0.13
PTPRF-208ENST00000437607 CTAGE5O15320 804 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 ST18O60284 1047 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 DUSP11O75319 330 aaKnown RBP14.21□□□□□ -0.13
PTPRF-208ENST00000437607 CST5P28325 142 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-208ENST00000437607 CDK7P50613 346 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 ACVR2BQ13705 512 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 TSGA10IPQ3SY00 556 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 BLOC1S2Q6QNY1 142 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 LRRC47Q8N1G4 583 aaKnown RBP14.21□□□□□ -0.13
PTPRF-208ENST00000437607 KIF2CQ99661 725 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 TM6SF1Q9BZW5 370 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 UPF3AQ9H1J1 476 aaKnown RBP14.21□□□□□ -0.13
PTPRF-208ENST00000437607 CNNM2Q9H8M5 875 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 TOMM22Q9NS69 142 aa14.21□□□□□ -0.13
PTPRF-208ENST00000437607 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-208ENST00000437607 MYH6P13533 1939 aa14.21□□□□□ -0.14
PTPRF-208ENST00000437607 TMEM265A0A087WTH1 108 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 E7EWF7 191 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 ZBED4O75132 1171 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 TIMP1P01033 207 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 ASGR1P07306 291 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 HMGB1P09429 215 aaKnown RBP14.2□□□□□ -0.14
PTPRF-208ENST00000437607 PCP11498 1178 aaKnown RBP14.2□□□□□ -0.14
PTPRF-208ENST00000437607 GJA9P57773 515 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 CTDSPL2Q05D32 466 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 CCDC144BQ3MJ40 725 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 AKNAD1Q5T1N1 836 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 C16orf59Q7L2K0 433 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 GMCL1P1Q8NEA9 526 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 NUP133Q8WUM0 1156 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 STAG1Q8WVM7 1258 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 NEK1Q96PY6 1258 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.2□□□□□ -0.141e-14■□□□□ 9
PTPRF-208ENST00000437607 UPF3BQ9BZI7 483 aaKnown RBP14.2□□□□□ -0.14
PTPRF-208ENST00000437607 ANAPC4Q9UJX5 808 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 FEM1BQ9UK73 627 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 CYP46A1Q9Y6A2 500 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 TAF6LQ9Y6J9 622 aa14.2□□□□□ -0.14
PTPRF-208ENST00000437607 TRIP12Q14669 1992 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-208ENST00000437607 ELP1O95163 1332 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 NEDD4P46934 1319 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 DCDC2CA8MYV0 355 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 TTLL1O95922 423 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 C6orf222P0C671 652 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-208ENST00000437607 FOSL2P15408 326 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 CNTN2Q02246 1040 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 PDE4BQ07343 736 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 GRIN2CQ14957 1233 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 ADCK5Q3MIX3 580 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 MFSD6Q6ZSS7 791 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 STOX1Q6ZVD7 989 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 ARMCX2Q7L311 632 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 HSCBQ8IWL3 235 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 ZNF444Q8N0Y2 327 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-208ENST00000437607 ANKRD35Q8N283 1001 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 CHST13Q8NET6 341 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 IL27Q8NEV9 243 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 NCOA7Q8NI08 942 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 KRT23Q9C075 422 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 ABHD16BQ9H3Z7 469 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 ZNF287Q9HBT7 754 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 SYNPO2Q9UMS6 1093 aa14.19□□□□□ -0.14
PTPRF-208ENST00000437607 ASTN1O14525 1302 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 ZNF536O15090 1300 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 PTPRSQ13332 1948 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-208ENST00000437607 BMP3P12645 472 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 NEK4P51957 841 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 OAZ1P54368 228 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 BECN1Q14457 450 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 RRP12Q5JTH9 1297 aaKnown RBP14.18□□□□□ -0.14
PTPRF-208ENST00000437607 RASIP1Q5U651 963 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 SLFN13Q68D06 897 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 MFSD5Q6N075 450 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 CCDC144CPQ8IYA2 1237 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 FAM133AQ8N9E0 248 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 NEDD1Q8NHV4 660 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 GLT1D1Q96MS3 346 aa14.18□□□□□ -0.14
PTPRF-208ENST00000437607 NCOR1O75376 2440 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 XIRP2A4UGR9 3374 aa14.17□□□□□ -0.14
PTPRF-208ENST00000437607 TCF20Q9UGU0 1960 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms