RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RSBN1LQ6PCB5 846 aaPredicted RBP10.89□□□□□ -0.67
USP54-205ENST00000424265 KIRREL3Q8IZU9 778 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 SLC26A6Q9BXS9 759 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 TSGA10Q9BZW7 698 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 C6orf50Q9HD87 102 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 ZNF277Q9NRM2 450 aaPredicted RBP10.89□□□□□ -0.67
USP54-205ENST00000424265 FAM205AQ6ZU69 1335 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 FOSBP53539 338 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 RCAN1P53805 252 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 PABPC4Q13310 644 aaKnown RBP eCLIP10.89□□□□□ -0.67
USP54-205ENST00000424265 MFN1Q8IWA4 741 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 CDK5RAP3Q96JB5 506 aa10.89□□□□□ -0.67
USP54-205ENST00000424265 USP27XA6NNY8 438 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 STX6O43752 255 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 KIF5CO60282 957 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 TOP1P11387 765 aaKnown RBP10.88□□□□□ -0.67
USP54-205ENST00000424265 MXRA7P84157 204 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 CCDC65Q8IXS2 484 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 RBM12BQ8IXT5 1001 aaKnown RBP10.88□□□□□ -0.67
USP54-205ENST00000424265 LCORLQ8N3X6 602 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 UPF1Q92900 1129 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP54-205ENST00000424265 MCM3P25205 808 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 TFAP4Q01664 338 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 PTH1RQ03431 593 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 IFFO1Q0D2I5 559 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 CUL3Q13618 768 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 CERKLQ49MI3 558 aaPredicted RBP10.88□□□□□ -0.67
USP54-205ENST00000424265 RCSD1Q6JBY9 416 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 PI16Q6UXB8 463 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 CTNNBL1Q8WYA6 563 aaPredicted RBP10.88□□□□□ -0.67
USP54-205ENST00000424265 NSUN4Q96CB9 384 aaKnown RBP10.88□□□□□ -0.67
USP54-205ENST00000424265 ZSCAN10Q96SZ4 725 aaPredicted RBP10.88□□□□□ -0.67
USP54-205ENST00000424265 PUS7LQ9H0K6 701 aaKnown RBP10.88□□□□□ -0.67
USP54-205ENST00000424265 RNF181Q9P0P0 153 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 ENTPD3O75355 529 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 DEXIO95424 95 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 ZNF76P36508 570 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 TBC1D31Q96DN5 1066 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 UBA5Q9GZZ9 404 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 MYO1FO00160 1098 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 SPAG5Q96R06 1193 aa10.88□□□□□ -0.67
USP54-205ENST00000424265 SEC62Q99442 399 aaKnown RBP10.88□□□□□ -0.67
USP54-205ENST00000424265 C5P01031 1676 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 LUC7L3O95232 432 aaKnown RBP10.87□□□□□ -0.67
USP54-205ENST00000424265 USP14P54578 494 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 GNG11P61952 73 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 GNPTABQ3T906 1256 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 LMBR1Q8WVP7 490 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 TTC14Q96N46 770 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 LARP6Q9BRS8 491 aaKnown RBP10.87□□□□□ -0.67
USP54-205ENST00000424265 PARD6BQ9BYG5 372 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 CBX8Q9HC52 389 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 GINM1Q9NU53 330 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 CCDC151A5D8V7 595 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 PRDX5P30044 214 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 RAB27AP51159 221 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 PPP4CP60510 307 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 CTDSPL2Q05D32 466 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 CHURC1Q8WUH1 139 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 SDR42E1Q8WUS8 393 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 ALG1Q9BT22 464 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 KANSL2Q9H9L4 492 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 BLOC1S6Q9UL45 172 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 BRD1O95696 1058 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 KCNB1Q14721 858 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 TMC6Q7Z403 805 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 BRAPQ7Z569 592 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 RABGGTAQ92696 567 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 SPATA32Q96LK8 384 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 PFDN1O60925 122 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 PYGBP11216 843 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 CDC25BP30305 580 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 PAPOLAP51003 745 aaKnown RBP10.87□□□□□ -0.67
USP54-205ENST00000424265 DYNC1I2Q13409 638 aaKnown RBP10.87□□□□□ -0.67
USP54-205ENST00000424265 TMEM266Q2M3C6 531 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 CCDC40Q4G0X9 1142 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 SBK1Q52WX2 424 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 KCNB2Q92953 911 aa10.87□□□□□ -0.67
USP54-205ENST00000424265 HERC5Q9UII4 1024 aaKnown RBP10.87□□□□□ -0.67
USP54-205ENST00000424265 TPX2Q9ULW0 747 aaKnown RBP10.87□□□□□ -0.67
USP54-205ENST00000424265 AFDNP55196 1824 aaKnown RBP10.86□□□□□ -0.67
USP54-205ENST00000424265 IPO5O00410 1097 aaKnown RBP10.86□□□□□ -0.67
USP54-205ENST00000424265 TCP10Q12799 353 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 DNAJC14Q6Y2X3 702 aaPredicted RBP10.86□□□□□ -0.67
USP54-205ENST00000424265 CCDC80Q76M96 950 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 CSRNP1Q96S65 589 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 MTRQ99707 1265 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 C4BP0C0L5 1744 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 SALL3Q9BXA9 1300 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 MYBPC2Q14324 1141 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 CEP128Q6ZU80 1094 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 NCAPG2Q86XI2 1143 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 VGLL2Q8N8G2 317 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 GBP7Q8N8V2 638 aaPredicted RBP10.86□□□□□ -0.67
USP54-205ENST00000424265 PPP1R13BQ96KQ4 1090 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 CICQ96RK0 1608 aaPredicted RBP10.86□□□□□ -0.67
USP54-205ENST00000424265 RNF40O75150 1001 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 VCAM1P19320 739 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 CD151P48509 253 aa10.86□□□□□ -0.67
USP54-205ENST00000424265 TUBB4BP68371 445 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms