RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 BRWD1Q9NSI6 2320 aa21.37■■□□□ 1.01
VCP-202ENST00000417448 NKX3-2P78367 333 aa21.37■■□□□ 1.01
VCP-202ENST00000417448 TMEM31Q5JXX7 168 aa21.37■■□□□ 1.01
VCP-202ENST00000417448 KRT40Q6A162 431 aa21.37■■□□□ 1.01
VCP-202ENST00000417448 EVI5LQ96CN4 794 aa21.37■■□□□ 1.01
VCP-202ENST00000417448 CCDC17Q96LX7 622 aa21.37■■□□□ 1.01
VCP-202ENST00000417448 ABHD16BQ9H3Z7 469 aa21.37■■□□□ 1.01
VCP-202ENST00000417448 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.36■■□□□ 1.01
VCP-202ENST00000417448 EPOPA6NHQ4 379 aa21.36■■□□□ 1.01
VCP-202ENST00000417448 TLL1O43897 1013 aa21.36■■□□□ 1.01
VCP-202ENST00000417448 POU3F3P20264 500 aaPredicted RBP21.36■■□□□ 1.01
VCP-202ENST00000417448 CXCL17Q6UXB2 119 aa21.36■■□□□ 1.01
VCP-202ENST00000417448 SLF1Q9BQI6 1058 aa21.36■■□□□ 1.01
VCP-202ENST00000417448 NOC4LQ9BVI4 516 aaKnown RBP21.36■■□□□ 1.01
VCP-202ENST00000417448 GOPCQ9HD26 462 aa21.36■■□□□ 1.01
VCP-202ENST00000417448 SLC4A7Q9Y6M7 1214 aa21.36■■□□□ 1.01
VCP-202ENST00000417448 FAM86C2PA6NEL3 165 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 RAD21O60216 631 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 PTGS1P23219 599 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 C12orf60Q5U649 245 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 C16orf86Q6ZW13 317 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 ARMCX2Q7L311 632 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 APPBP2Q92624 585 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.35■■□□□ 1.01
VCP-202ENST00000417448 TRPV6Q9H1D0 765 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 KANSL2Q9H9L4 492 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 CERS4Q9HA82 394 aa21.35■■□□□ 1.01
VCP-202ENST00000417448 COL4A4P53420 1690 aaPredicted RBP21.34■■□□□ 1.01
VCP-202ENST00000417448 B4GALT4O60513 344 aa21.34■■□□□ 1.01
VCP-202ENST00000417448 CA3P07451 260 aa21.34■■□□□ 1.01
VCP-202ENST00000417448 GSPT1P15170 499 aaKnown RBP21.34■■□□□ 1.01
VCP-202ENST00000417448 CCDC144CPQ8IYA2 1237 aa21.34■■□□□ 1.01
VCP-202ENST00000417448 FAM227BQ96M60 508 aa21.34■■□□□ 1.01
VCP-202ENST00000417448 SLC4A4Q9Y6R1 1079 aa21.34■■□□□ 1.01
VCP-202ENST00000417448 MYH4Q9Y623 1939 aa21.33■■□□□ 1.01
VCP-202ENST00000417448 ATP2A2P16615 1042 aaKnown RBP21.33■■□□□ 1.01
VCP-202ENST00000417448 SLC4A3P48751 1232 aa21.33■■□□□ 1.01
VCP-202ENST00000417448 ITGA7Q13683 1181 aa21.33■■□□□ 1.01
VCP-202ENST00000417448 ZMYM1Q5SVZ6 1142 aa21.33■■□□□ 1.01
VCP-202ENST00000417448 TTC22Q5TAA0 569 aa21.33■■□□□ 1.01
VCP-202ENST00000417448 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.33■■□□□ 1.01
VCP-202ENST00000417448 SCLYQ96I15 445 aa21.33■■□□□ 1.01
VCP-202ENST00000417448 STRBPQ96SI9 672 aaKnown RBP21.33■■□□□ 1.01
VCP-202ENST00000417448 PPP4R2Q9NY27 417 aa21.33■■□□□ 1.01
VCP-202ENST00000417448 ZBBXA8MT70 800 aa21.32■■□□□ 1
VCP-202ENST00000417448 ATP2A1O14983 1001 aa21.32■■□□□ 1
VCP-202ENST00000417448 GPR37L1O60883 481 aa21.32■■□□□ 1
VCP-202ENST00000417448 ARHGEF15O94989 841 aa21.32■■□□□ 1
VCP-202ENST00000417448 ZFYP08048 801 aaPredicted RBP21.32■■□□□ 1
VCP-202ENST00000417448 NMIQ13287 307 aaPredicted RBP21.32■■□□□ 1
VCP-202ENST00000417448 TTLL4Q14679 1199 aa21.32■■□□□ 1
VCP-202ENST00000417448 CPXCR1Q8N123 301 aa21.32■■□□□ 1
VCP-202ENST00000417448 PTPRSQ13332 1948 aa21.31■■□□□ 1
VCP-202ENST00000417448 A0A0D9SFI3 127 aa21.31■■□□□ 1
VCP-202ENST00000417448 USP17L12C9JPN9 530 aa21.31■■□□□ 1
VCP-202ENST00000417448 USP17L21D6R901 530 aa21.31■■□□□ 1
VCP-202ENST00000417448 GPAA1O43292 621 aa21.31■■□□□ 1
VCP-202ENST00000417448 AGBL1Q96MI9 1066 aa21.31■■□□□ 1
VCP-202ENST00000417448 RAVER2Q9HCJ3 691 aaKnown RBP21.31■■□□□ 1
VCP-202ENST00000417448 ATP8A2Q9NTI2 1148 aa21.31■■□□□ 1
VCP-202ENST00000417448 COG5Q9UP83 839 aa21.31■■□□□ 1
VCP-202ENST00000417448 GNEQ9Y223 722 aaKnown RBP21.31■■□□□ 1
VCP-202ENST00000417448 GTPBP6O43824 516 aaPredicted RBP21.3■■□□□ 1
VCP-202ENST00000417448 SDSP20132 328 aa21.3■■□□□ 1
VCP-202ENST00000417448 PSMC6P62333 389 aa21.3■■□□□ 1
VCP-202ENST00000417448 CNTN2Q02246 1040 aa21.3■■□□□ 1
VCP-202ENST00000417448 ALYREFQ86V81 257 aaKnown RBP21.3■■□□□ 1
VCP-202ENST00000417448 ANKRD35Q8N283 1001 aa21.3■■□□□ 1
VCP-202ENST00000417448 CD320Q9NPF0 282 aa21.3■■□□□ 1
VCP-202ENST00000417448 GSG1L2A8MUP6 293 aa21.29■■□□□ 1
VCP-202ENST00000417448 NDUFB10O96000 172 aa21.29■■□□□ 1
VCP-202ENST00000417448 TNFAIP2Q03169 654 aa21.29■■□□□ 1
VCP-202ENST00000417448 FSCN1Q16658 493 aaKnown RBP21.29■■□□□ 1
VCP-202ENST00000417448 LRRFIP1Q32MZ4 808 aaKnown RBP21.29■■□□□ 1
VCP-202ENST00000417448 TMEM67Q5HYA8 995 aa21.29■■□□□ 1
VCP-202ENST00000417448 TLK2Q86UE8 772 aa21.29■■□□□ 1
VCP-202ENST00000417448 RPUSD2Q8IZ73 545 aaKnown RBP21.29■■□□□ 1
VCP-202ENST00000417448 STK11IPQ8N1F8 1099 aa21.29■■□□□ 1
VCP-202ENST00000417448 PRPF38AQ8NAV1 312 aaKnown RBP21.29■■□□□ 1
VCP-202ENST00000417448 DDX49Q9Y6V7 483 aaKnown RBP21.29■■□□□ 1
VCP-202ENST00000417448 LCTP09848 1927 aa21.29■■□□□ 1
VCP-202ENST00000417448 TANC1Q9C0D5 1861 aa21.28■■□□□ 1
VCP-202ENST00000417448 WDFY4Q6ZS81 3184 aa21.28■■□□□ 1
VCP-202ENST00000417448 F5H6K3 240 aa21.28■■□□□ 1
VCP-202ENST00000417448 CABYRO75952 493 aa21.28■■□□□ 1
VCP-202ENST00000417448 KLRC3Q07444 240 aa21.28■■□□□ 1
VCP-202ENST00000417448 TMEM63BQ5T3F8 832 aa21.28■■□□□ 1
VCP-202ENST00000417448 SPRED2Q7Z698 418 aa21.28■■□□□ 1
VCP-202ENST00000417448 SLC38A10Q9HBR0 1119 aa21.28■■□□□ 1
VCP-202ENST00000417448 TET1Q8NFU7 2136 aa21.28■■□□□ 1
VCP-202ENST00000417448 APPP05067 770 aa21.27■■□□□ 1
VCP-202ENST00000417448 VPS53Q5VIR6 699 aa21.27■■□□□ 1
VCP-202ENST00000417448 NOL8Q76FK4 1167 aaKnown RBP21.27■■□□□ 1
VCP-202ENST00000417448 FAM133AQ8N9E0 248 aa21.27■■□□□ 1
VCP-202ENST00000417448 ARNTL2Q8WYA1 636 aa21.27■■□□□ 1
VCP-202ENST00000417448 HLA-CQ95604 372 aa21.27■■□□□ 1
VCP-202ENST00000417448 EPB41L4AQ9HCS5 686 aaPredicted RBP21.27■■□□□ 1
VCP-202ENST00000417448 LPXNO60711 386 aa21.26■□□□□ 0.99
VCP-202ENST00000417448 ZBED4O75132 1171 aa21.26■□□□□ 0.99
VCP-202ENST00000417448 SMPD1P17405 629 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms