RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 ASIC2Q16515 512 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 STYK1Q6J9G0 422 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 ADPGKQ9BRR6 497 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 NT5C3AQ9H0P0 336 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 PCDHA12Q9UN75 941 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.25■□□□□ 0.35
PHRF1-203ENST00000416188 ZNF157P51786 506 aaPredicted RBP17.25■□□□□ 0.35
PHRF1-203ENST00000416188 C8orf74Q6P047 294 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 FAM76AQ8TAV0 307 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 CPS1P31327 1500 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 USP42Q9H9J4 1324 aaKnown RBP17.25■□□□□ 0.35
PHRF1-203ENST00000416188 ATP2A2P16615 1042 aaKnown RBP17.25■□□□□ 0.35
PHRF1-203ENST00000416188 MAGEA1P43355 309 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 TRIM28Q13263 835 aaKnown RBP17.25■□□□□ 0.35
PHRF1-203ENST00000416188 MTX1Q13505 466 aa17.25■□□□□ 0.35
PHRF1-203ENST00000416188 FAM196BA6NMK8 535 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 RIOK3O14730 519 aaKnown RBP17.24■□□□□ 0.35
PHRF1-203ENST00000416188 SPP2Q13103 211 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 SLC9C1Q4G0N8 1177 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 NEK8Q86SG6 692 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 SLFN12Q8IYM2 578 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 ABI1Q8IZP0 508 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 MICALL1Q8N3F8 863 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 ZNF274Q96GC6 653 aaPredicted RBP17.24■□□□□ 0.35
PHRF1-203ENST00000416188 SMC6Q96SB8 1091 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 MAK16Q9BXY0 300 aaKnown RBP17.24■□□□□ 0.35
PHRF1-203ENST00000416188 HOXC10Q9NYD6 342 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 SERTAD1Q9UHV2 236 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 GCNT3O95395 438 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 GPATCH11Q8N954 259 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 NELFBQ8WX92 580 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 PSMB7Q99436 277 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 MRPL44Q9H9J2 332 aaKnown RBP17.24■□□□□ 0.35
PHRF1-203ENST00000416188 FAM169AQ9Y6X4 670 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 PNOCQ13519 176 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 NDC80O14777 642 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 LMNB1P20700 586 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 TMTC1Q8IUR5 882 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 OSBP2Q969R2 916 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 NUP58Q9BVL2 599 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 DDX25Q9UHL0 483 aaKnown RBP17.24■□□□□ 0.35
PHRF1-203ENST00000416188 ARHGAP6O43182 974 aa17.24■□□□□ 0.35
PHRF1-203ENST00000416188 ZBTB12Q9Y330 459 aaPredicted RBP17.24■□□□□ 0.35
PHRF1-203ENST00000416188 USP17L10C9JJH3 530 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 EXOC3O60645 756 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 POLGP54098 1239 aaPredicted RBP17.23■□□□□ 0.35
PHRF1-203ENST00000416188 GALNT17Q6IS24 598 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 SECISBP2LQ93073 1101 aaKnown RBP17.23■□□□□ 0.35
PHRF1-203ENST00000416188 AGTPBP1Q9UPW5 1226 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 ZMYM6O95789 1325 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 PNMA8AQ86V59 439 aaPredicted RBP17.23■□□□□ 0.35
PHRF1-203ENST00000416188 NOX5Q96PH1 765 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 USP28Q96RU2 1077 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 NAP1L3Q99457 506 aaPredicted RBP17.23■□□□□ 0.35
PHRF1-203ENST00000416188 SLF1Q9BQI6 1058 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 TRIM31Q9BZY9 425 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 ZNF710Q8N1W2 664 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 RNF34Q969K3 372 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 IMPACTQ9P2X3 320 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 STAP2Q9UGK3 403 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 TPCN1Q9ULQ1 816 aa17.23■□□□□ 0.35
PHRF1-203ENST00000416188 HPDP32754 393 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-203ENST00000416188 MRPS9P82933 396 aaKnown RBP17.22■□□□□ 0.35
PHRF1-203ENST00000416188 ZNF34Q8IZ26 560 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 STRIP1Q5VSL9 837 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 C9orf131Q5VYM1 1079 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 USP17L2Q6R6M4 530 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 LRFN2Q9ULH4 789 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 KDM3AQ9Y4C1 1321 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 CCND2P30279 289 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 UAP1Q16222 522 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-203ENST00000416188 CDHR1Q96JP9 859 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 SPATA31D1Q6ZQQ2 1576 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 NRXN1Q9ULB1 1477 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 ERCC5P28715 1186 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-203ENST00000416188 GMPSP49915 693 aaPredicted RBP17.22■□□□□ 0.35
PHRF1-203ENST00000416188 ADALQ6DHV7 355 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 XPO4Q9C0E2 1151 aaKnown RBP17.22■□□□□ 0.35
PHRF1-203ENST00000416188 ELP3Q9H9T3 547 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 OGFRQ9NZT2 677 aa17.22■□□□□ 0.35
PHRF1-203ENST00000416188 MROH7-TTC4A0A0A0MT08 1334 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 FAM207AQ9NSI2 230 aaPredicted RBP17.21■□□□□ 0.35
PHRF1-203ENST00000416188 CTTNBP2NLQ9P2B4 639 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 PFKFB1P16118 471 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 KLHL30Q0D2K2 578 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 PIGSQ96S52 555 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 GGA3Q9NZ52 723 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 SAMD15Q9P1V8 674 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 PRPF6O94906 941 aaKnown RBP17.21■□□□□ 0.35
PHRF1-203ENST00000416188 TECP42680 631 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 SF3B3Q15393 1217 aaKnown RBP17.21■□□□□ 0.35
PHRF1-203ENST00000416188 FAM84BQ96KN1 310 aaPredicted RBP17.21■□□□□ 0.35
PHRF1-203ENST00000416188 AKT3Q9Y243 479 aa17.21■□□□□ 0.35
PHRF1-203ENST00000416188 YARSP54577 528 aaKnown RBP17.21■□□□□ 0.34
PHRF1-203ENST00000416188 HUNKP57058 714 aa17.21■□□□□ 0.34
PHRF1-203ENST00000416188 ELF2Q15723 593 aa17.21■□□□□ 0.34
PHRF1-203ENST00000416188 ANGEL2Q5VTE6 544 aaKnown RBP17.21■□□□□ 0.34
PHRF1-203ENST00000416188 NLRC4Q9NPP4 1024 aa17.21■□□□□ 0.34
PHRF1-203ENST00000416188 PREX1Q8TCU6 1659 aa17.2■□□□□ 0.34
PHRF1-203ENST00000416188 CEP104O60308 925 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms