RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SALL4Q9UJQ4 1053 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 AGPSO00116 658 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 CYP27A1Q02318 531 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 TAF3Q5VWG9 929 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 OR8K1Q8NGG5 319 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 TRIM9Q9C026 710 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 THAP9Q9H5L6 903 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 RNF216Q9NWF9 866 aaPredicted RBP11.07□□□□□ -0.64
SS18-203ENST00000415083 ADAMTSL1Q8N6G6 1762 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 USP14P54578 494 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 NFIXQ14938 502 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 EZH2Q15910 746 aaKnown RBP11.07□□□□□ -0.64
SS18-203ENST00000415083 DGKHQ86XP1 1220 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 ZSCAN29Q8IWY8 852 aaPredicted RBP11.07□□□□□ -0.64
SS18-203ENST00000415083 RIN2Q8WYP3 895 aaPredicted RBP11.07□□□□□ -0.64
SS18-203ENST00000415083 HINFPQ9BQA5 517 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 NUDT12Q9BQG2 462 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 BLOC1S4Q9NUP1 217 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 PSD3Q9NYI0 1048 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 ZNF662Q6ZS27 426 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 EXOC4Q96A65 974 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 TMEM260Q9NX78 707 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 VPS18Q9P253 973 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 MYO1AQ9UBC5 1043 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 MTMR7Q9Y216 660 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 MYH7BA7E2Y1 1941 aa11.07□□□□□ -0.64
SS18-203ENST00000415083 ECM1Q16610 540 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 JAKMIP3Q5VZ66 844 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 DTHD1Q6ZMT9 781 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 HDAC7Q8WUI4 952 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 PNMA5Q96PV4 448 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 TUBGCP2Q9BSJ2 902 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 NHEJ1Q9H9Q4 299 aaPredicted RBP11.06□□□□□ -0.64
SS18-203ENST00000415083 TRIM14Q14142 442 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 HDXQ7Z353 690 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 ZMYND12Q9H0C1 365 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 KAT14Q9H8E8 782 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 ARHGAP20Q9P2F6 1191 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 SIK3Q9Y2K2 1263 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 CAPN6Q9Y6Q1 641 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 CTAGE15A4D2H0 777 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 CTAGE8P0CG41 777 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 EEF1GP26641 437 aaKnown RBP11.06□□□□□ -0.64
SS18-203ENST00000415083 SPAG1Q07617 926 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 KCNK18Q7Z418 384 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 HEATR3Q7Z4Q2 680 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 CTAGE6Q86UF2 777 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 CTAGE4Q8IX94 777 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 RTFDC1Q9BY42 306 aaPredicted RBP11.06□□□□□ -0.64
SS18-203ENST00000415083 TCP11L1Q9NUJ3 509 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 SMARCAL1Q9NZC9 954 aa11.06□□□□□ -0.64
SS18-203ENST00000415083 SAP30BPQ9UHR5 308 aaKnown RBP11.06□□□□□ -0.64
SS18-203ENST00000415083 TRIM66O15016 1216 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 MRPS25P82663 173 aaKnown RBP11.05□□□□□ -0.64
SS18-203ENST00000415083 GRB10Q13322 594 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 POTEDQ86YR6 584 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 CCDC155Q8N6L0 562 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 CAPZA3Q96KX2 299 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 CNOT6LQ96LI5 555 aaKnown RBP11.05□□□□□ -0.64
SS18-203ENST00000415083 GDAP1L1Q96MZ0 367 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 C7orf25Q9BPX7 421 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 RMND1Q9NWS8 449 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 EHD2Q9NZN4 543 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 FEZ2Q9UHY8 353 aaPredicted RBP11.05□□□□□ -0.64
SS18-203ENST00000415083 ZSCAN26Q16670 478 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 USP17L2Q6R6M4 530 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 CREG2Q8IUH2 290 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 TGFBRAP1Q8WUH2 860 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 P2RX5Q93086 422 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 FGFBP2Q9BYJ0 223 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 CALCOCO1Q9P1Z2 691 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 LUC7L2Q9Y383 392 aaKnown RBP11.05□□□□□ -0.64
SS18-203ENST00000415083 ATAD5Q96QE3 1844 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 LTBP1Q14766 1721 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 SLC37A4O43826 429 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 PHACTR2O75167 634 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 CALML3P27482 149 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 PRPHP41219 470 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 NOVP48745 357 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 GJA10Q969M2 543 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 MTMR9Q96QG7 549 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 EXOC1Q9NV70 894 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 HPCAL4Q9UM19 191 aa11.05□□□□□ -0.64
SS18-203ENST00000415083 MYMKA6NI61 221 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 CCNE1P24864 410 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 LMAN1P49257 510 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 TUBB2AQ13885 445 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 CCDC122Q5T0U0 273 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 CABP7Q86V35 215 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 MAPKAPK5Q8IW41 473 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 COG1Q8WTW3 980 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 TRIM47Q96LD4 638 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 TUBB2BQ9BVA1 445 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 HAUS4Q9H6D7 363 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 MLXIPQ9HAP2 919 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 THRAP3Q9Y2W1 955 aaKnown RBP11.04□□□□□ -0.64
SS18-203ENST00000415083 TECP42680 631 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 AARSP49588 968 aaKnown RBP eCLIP11.04□□□□□ -0.64
SS18-203ENST00000415083 ATP2B2Q01814 1243 aa11.04□□□□□ -0.64
SS18-203ENST00000415083 C2orf54Q08AI8 447 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms