RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZNF214Q9UL59 606 aaPredicted RBP8.61□□□□□ -1.03
USP40-202ENST00000409945 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.6□□□□□ -1.03
USP40-202ENST00000409945 TLDC2A0PJX2 215 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 C1QTNF9BB2RNN3 333 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 C9orf172C9J069 976 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 SART1O43290 800 aaKnown RBP8.6□□□□□ -1.03
USP40-202ENST00000409945 CAP2P40123 477 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 DCAF15Q66K64 600 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 KIAA1211LQ6NV74 962 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 EZH1Q92800 747 aaPredicted RBP8.6□□□□□ -1.03
USP40-202ENST00000409945 DCAF5Q96JK2 942 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 FOXQ1Q9C009 403 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 CBFA2T2O43439 604 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 AXDND1Q5T1B0 1012 aaPredicted RBP8.6□□□□□ -1.03
USP40-202ENST00000409945 HDGFL2Q7Z4V5 671 aaPredicted RBP8.6□□□□□ -1.03
USP40-202ENST00000409945 CDH24Q86UP0 819 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 TXNRD3Q86VQ6 643 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 MIPEPQ99797 713 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 SUSD2Q9UGT4 822 aa8.6□□□□□ -1.03
USP40-202ENST00000409945 MARF1Q9Y4F3 1742 aaKnown RBP8.59□□□□□ -1.03
USP40-202ENST00000409945 TOPAZ1Q8N9V7 1692 aa8.59□□□□□ -1.03
USP40-202ENST00000409945 SHOXO15266 292 aa8.59□□□□□ -1.03
USP40-202ENST00000409945 PDPK1O15530 556 aa8.59□□□□□ -1.03
USP40-202ENST00000409945 MAP4P27816 1152 aaKnown RBP8.59□□□□□ -1.03
USP40-202ENST00000409945 HNRNPUQ00839 825 aaKnown RBP eCLIP8.59□□□□□ -1.03
USP40-202ENST00000409945 TCEAL1Q15170 157 aa8.59□□□□□ -1.03
USP40-202ENST00000409945 MKL1Q969V6 931 aa8.59□□□□□ -1.03
USP40-202ENST00000409945 PUS7Q96PZ0 661 aaKnown RBP8.59□□□□□ -1.03
USP40-202ENST00000409945 TERF2IPQ9NYB0 399 aa8.59□□□□□ -1.03
USP40-202ENST00000409945 U3KQE9 123 aa8.59□□□□□ -1.03
USP40-202ENST00000409945 LRRN2O75325 713 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 LRIG2O94898 1065 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 APBA3O96018 575 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 ADMP35318 185 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 TMF1P82094 1093 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 GNPTABQ3T906 1256 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 UNC5CLQ8IV45 518 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 FAM20CQ8IXL6 584 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 MRFAP1L1Q96HT8 127 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 CCDC74BQ96LY2 380 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 CEP41Q9BYV8 373 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 PRDM11Q9NQV5 511 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 PCOLCE2Q9UKZ9 415 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 CDK12Q9NYV4 1490 aaPredicted RBP8.58□□□□□ -1.04
USP40-202ENST00000409945 NFE2L2Q16236 605 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 LETMD1Q6P1Q0 360 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 VWCEQ96DN2 955 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 CCDC113Q9H0I3 377 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 SUCOQ9UBS9 1254 aaKnown RBP8.58□□□□□ -1.04
USP40-202ENST00000409945 APEX2Q9UBZ4 518 aa8.58□□□□□ -1.04
USP40-202ENST00000409945 TRPM3Q9HCF6 1732 aaPredicted RBP8.58□□□□□ -1.04
USP40-202ENST00000409945 NINLQ9Y2I6 1382 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 ALS2Q96Q42 1657 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 ST20-MTHFSA0A0A6YYL1 179 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 HMX2A2RU54 273 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 EPHX1P07099 455 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 SNW1Q13573 536 aaKnown RBP8.57□□□□□ -1.04
USP40-202ENST00000409945 SH3TC2Q8TF17 1288 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 GATA6Q92908 595 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 PHAXQ9H814 394 aaKnown RBP8.57□□□□□ -1.04
USP40-202ENST00000409945 LEMD3Q9Y2U8 911 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 USP47Q96K76 1375 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 TTC21AQ8NDW8 1320 aa8.57□□□□□ -1.04
USP40-202ENST00000409945 GBP1P32455 592 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 RASGRF1Q13972 1273 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 SDE2Q6IQ49 451 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 KCNF1Q9H3M0 494 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 KTN1Q86UP2 1357 aaKnown RBP8.56□□□□□ -1.04
USP40-202ENST00000409945 EOMESO95936 686 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 USP6P35125 1406 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 PMS1P54277 932 aaKnown RBP8.56□□□□□ -1.04
USP40-202ENST00000409945 SQSTM1Q13501 440 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 SLC10A6Q3KNW5 377 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 BEND4Q6ZU67 534 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 TOP6BLQ8N6T0 577 aa8.56□□□□□ -1.04
USP40-202ENST00000409945 FAM95CA0A1B0GW59 222 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 TBX1O43435 398 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 EVA1CP58658 441 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 SLC7A5Q01650 507 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 MTERF2Q49AM1 385 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 ZNF513Q8N8E2 541 aaPredicted RBP8.55□□□□□ -1.04
USP40-202ENST00000409945 KCT2Q8NC54 265 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 KCNH5Q8NCM2 988 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 FGD4Q96M96 766 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 NACC1Q96RE7 527 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 HAUS7Q99871 368 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 DUSP23Q9BVJ7 150 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 PRDM10Q9NQV6 1147 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 BTG4Q9NY30 223 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 ZMYM5Q9UJ78 669 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 MINPP1Q9UNW1 487 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.55□□□□□ -1.04
USP40-202ENST00000409945 NWD2Q9ULI1 1742 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 ATRNO75882 1429 aa8.55□□□□□ -1.04
USP40-202ENST00000409945 COL14A1Q05707 1796 aaKnown RBP8.54□□□□□ -1.04
USP40-202ENST00000409945 SLIT2O94813 1529 aa8.54□□□□□ -1.04
USP40-202ENST00000409945 PRR33A8MZF0 331 aa8.54□□□□□ -1.04
USP40-202ENST00000409945 SUSD5O60279 629 aa8.54□□□□□ -1.04
USP40-202ENST00000409945 NFKBIBQ15653 356 aa8.54□□□□□ -1.04
USP40-202ENST00000409945 VPS72Q15906 364 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms