RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 RBM28Q9NW13 759 aaKnown RBP12.67□□□□□ -0.38
CHMP3-205ENST00000409810 LCTP09848 1927 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 DNAJC25-GNG10A0A024R161 153 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 POTEB2H3BUK9 544 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 ZBTB43O43298 467 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 RPS6KB1P23443 525 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 SMARCA1P28370 1054 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 GJA8P48165 433 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 CACNB2Q08289 660 aaPredicted RBP12.66□□□□□ -0.38
CHMP3-205ENST00000409810 QRICH1Q2TAL8 776 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 NSMFQ6X4W1 530 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 Q6ZUG5 572 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 ZNF467Q7Z7K2 595 aaPredicted RBP12.66□□□□□ -0.38
CHMP3-205ENST00000409810 FBXL16Q8N461 479 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 TINF2Q9BSI4 451 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 SPZ1Q9BXG8 430 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 AMNQ9BXJ7 453 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 TM6SF1Q9BZW5 370 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 RIOX1Q9H6W3 641 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 PAK6Q9NQU5 681 aaPredicted RBP12.66□□□□□ -0.38
CHMP3-205ENST00000409810 FLRT1Q9NZU1 646 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 SEC63Q9UGP8 760 aaKnown RBP12.66□□□□□ -0.38
CHMP3-205ENST00000409810 MRPL11Q9Y3B7 192 aaKnown RBP12.66□□□□□ -0.38
CHMP3-205ENST00000409810 CYP46A1Q9Y6A2 500 aa12.66□□□□□ -0.38
CHMP3-205ENST00000409810 SYNGAP1Q96PV0 1343 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 PTPDC1A2A3K4 754 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 POTEFA5A3E0 1075 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 MSCO60682 206 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 CYP2C19P33261 490 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 TRIM32Q13049 653 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 COL9A3Q14050 684 aaPredicted RBP12.65□□□□□ -0.38
CHMP3-205ENST00000409810 PPP2R5BQ15173 497 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 RTN1Q16799 776 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 MUM1L1Q5H9M0 696 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 APOA5Q6Q788 366 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 RNF207Q6ZRF8 634 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 RUFY3Q7L099 469 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 HOMER1Q86YM7 354 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 MCF2L2Q86YR7 1114 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 FANCBQ8NB91 859 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 MTMR8Q96EF0 704 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 RRP36Q96EU6 259 aaKnown RBP12.65□□□□□ -0.38
CHMP3-205ENST00000409810 MPHOSPH6Q99547 160 aaKnown RBP12.65□□□□□ -0.38
CHMP3-205ENST00000409810 CYP39A1Q9NYL5 469 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 ADD3Q9UEY8 706 aaKnown RBP12.65□□□□□ -0.38
CHMP3-205ENST00000409810 NRBP1Q9UHY1 535 aa12.65□□□□□ -0.38
CHMP3-205ENST00000409810 NAP1L2Q9ULW6 460 aaPredicted RBP12.65□□□□□ -0.38
CHMP3-205ENST00000409810 PNMA6FA0A0J9YX94 578 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 KLF18A0A0U1RQI7 1052 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 CCDC196A0A1B0GTZ2 297 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 ASB14A6NK59 587 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 GOLGA8AA7E2F4 631 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 GOLGA8BA8MQT2 603 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 NFIBO00712 420 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 SGPL1O95470 568 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 TAL1P17542 331 aaPredicted RBP12.64□□□□□ -0.39
CHMP3-205ENST00000409810 RXRAP19793 462 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 MAMDC4Q6UXC1 1216 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 CCDC144CPQ8IYA2 1237 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 FAM133AQ8N9E0 248 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 U2AF1L4Q8WU68 220 aaKnown RBP12.64□□□□□ -0.39
CHMP3-205ENST00000409810 CLEC4DQ8WXI8 215 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 DEFB118Q96PH6 123 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 PIGSQ96S52 555 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 ZSWIM6Q9HCJ5 1215 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 CNPY2Q9Y2B0 182 aa12.64□□□□□ -0.39
CHMP3-205ENST00000409810 LOC102724159A0A0B4J2E5 919 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 B4DLN1 442 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 CYTH3O43739 400 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 IGHA2P01877 340 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 CYBAP13498 195 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 CPA1P15085 419 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 CNGA1P29973 690 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 CCND3P30281 292 aaPredicted RBP12.63□□□□□ -0.39
CHMP3-205ENST00000409810 RGS19P49795 217 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 METAP2P50579 478 aaKnown RBP eCLIP12.63□□□□□ -0.39
CHMP3-205ENST00000409810 MRPL12P52815 198 aaKnown RBP12.63□□□□□ -0.39
CHMP3-205ENST00000409810 BAATQ14032 418 aaPredicted RBP12.63□□□□□ -0.39
CHMP3-205ENST00000409810 PWP2Q15269 919 aaKnown RBP12.63□□□□□ -0.39
CHMP3-205ENST00000409810 C8orf34Q49A92 452 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 TMTC3Q6ZXV5 915 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 RAB11FIP4Q86YS3 637 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 SAMD3Q8N6K7 520 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 RGS22Q8NE09 1264 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 BRF1Q92994 677 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 AGXT2Q9BYV1 514 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 DDX20Q9UHI6 824 aaKnown RBP12.63□□□□□ -0.39
CHMP3-205ENST00000409810 PCDHA1Q9Y5I3 950 aa12.63□□□□□ -0.39
CHMP3-205ENST00000409810 LRRC37A2A6NM11 1700 aa12.62□□□□□ -0.39
CHMP3-205ENST00000409810 SEPT4O43236 478 aa12.62□□□□□ -0.39
CHMP3-205ENST00000409810 PLEKHA8P1O95397 391 aa12.62□□□□□ -0.39
CHMP3-205ENST00000409810 TFRCP02786 760 aaKnown RBP12.62□□□□□ -0.39
CHMP3-205ENST00000409810 EN2P19622 333 aaPredicted RBP12.62□□□□□ -0.39
CHMP3-205ENST00000409810 CALML3P27482 149 aa12.62□□□□□ -0.39
CHMP3-205ENST00000409810 RPS6P62753 249 aaKnown RBP12.62□□□□□ -0.39
CHMP3-205ENST00000409810 APOBRQ0VD83 1088 aa12.62□□□□□ -0.39
CHMP3-205ENST00000409810 ARMCX2Q7L311 632 aa12.62□□□□□ -0.39
CHMP3-205ENST00000409810 SRBD1Q8N5C6 995 aaKnown RBP12.62□□□□□ -0.39
CHMP3-205ENST00000409810 DNERQ8NFT8 737 aa12.62□□□□□ -0.39
CHMP3-205ENST00000409810 CRISPLD2Q9H0B8 497 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms