RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 OR52Z1P0C646 297 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 SYCP1Q15431 976 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 KRT26Q7Z3Y9 468 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 TRIM34Q9BYJ4 488 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 DUSP10Q9Y6W6 482 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 C4AP0C0L4 1744 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 C4BP0C0L5 1744 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 SLC37A4O43826 429 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 ZNF658Q5TYW1 1059 aaPredicted RBP15.02□□□□□ -0.01
VPS54-203ENST00000409558 SMCR8Q8TEV9 937 aaPredicted RBP15.02□□□□□ -0.01
VPS54-203ENST00000409558 RBM17Q96I25 401 aaKnown RBP15.02□□□□□ -0.01
VPS54-203ENST00000409558 ARGLU1Q9NWB6 273 aaPredicted RBP15.02□□□□□ -0.01
VPS54-203ENST00000409558 LUC7L2Q9Y383 392 aaKnown RBP15.02□□□□□ -0.01
VPS54-203ENST00000409558 DAGLAQ9Y4D2 1042 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 PAPPAQ13219 1627 aa15.02□□□□□ -0.01
VPS54-203ENST00000409558 FAM193AP78312 1265 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 SNX29Q8TEQ0 813 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 AFF2P51816 1311 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 USP17L10C9JJH3 530 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 GNAQP50148 359 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 DDR1Q08345 913 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 TBX2Q13207 712 aaPredicted RBP15.01□□□□□ -0.01
VPS54-203ENST00000409558 NT5DC1Q5TFE4 455 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 NEK8Q86SG6 692 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 KLHL34Q8N239 644 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 NOC4LQ9BVI4 516 aaKnown RBP15.01□□□□□ -0.01
VPS54-203ENST00000409558 KRT18P05783 430 aaKnown RBP15.01□□□□□ -0.01
VPS54-203ENST00000409558 CALCRLQ16602 461 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 GJD4Q96KN9 370 aaPredicted RBP15.01□□□□□ -0.01
VPS54-203ENST00000409558 CTAGE1Q96RT6 745 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 NLRC4Q9NPP4 1024 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 MEIS1O00470 390 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 RNASE9P60153 205 aaKnown RBP15.01□□□□□ -0.01
VPS54-203ENST00000409558 UBXN2AP68543 259 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 APBA1Q02410 837 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 APTXQ7Z2E3 356 aaKnown RBP15.01□□□□□ -0.01
VPS54-203ENST00000409558 SH3RF1Q7Z6J0 888 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 PARD6BQ9BYG5 372 aa15.01□□□□□ -0.01
VPS54-203ENST00000409558 TMX4Q9H1E5 349 aaPredicted RBP15.01□□□□□ -0.01
VPS54-203ENST00000409558 PLEKP08567 350 aaPredicted RBP15□□□□□ -0.01
VPS54-203ENST00000409558 LONP1P36776 959 aaKnown RBP15□□□□□ -0.01
VPS54-203ENST00000409558 SBK1Q52WX2 424 aa15□□□□□ -0.01
VPS54-203ENST00000409558 ANKRD40Q6AI12 368 aa15□□□□□ -0.01
VPS54-203ENST00000409558 CAGE1Q8TC20 777 aa15□□□□□ -0.01
VPS54-203ENST00000409558 CALML4Q96GE6 196 aa15□□□□□ -0.01
VPS54-203ENST00000409558 ABHD10Q9NUJ1 306 aa15□□□□□ -0.01
VPS54-203ENST00000409558 NPHP3-ACAD11A0A0J9YXS1 232 aa15□□□□□ -0.01
VPS54-203ENST00000409558 CCDC122Q5T0U0 273 aa15□□□□□ -0.01
VPS54-203ENST00000409558 TUBGCP2Q9BSJ2 902 aa15□□□□□ -0.01
VPS54-203ENST00000409558 STAT3P40763 770 aa15□□□□□ -0.01
VPS54-203ENST00000409558 CNGA4Q8IV77 575 aa15□□□□□ -0.01
VPS54-203ENST00000409558 DEF6Q9H4E7 631 aa15□□□□□ -0.01
VPS54-203ENST00000409558 ZNF287Q9HBT7 754 aa15□□□□□ -0.01
VPS54-203ENST00000409558 CHMP4BP1P59074 171 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 SMAP1Q8IYB5 467 aaPredicted RBP14.99□□□□□ -0.01
VPS54-203ENST00000409558 QTRT2Q9H974 415 aaKnown RBP14.99□□□□□ -0.01
VPS54-203ENST00000409558 ABCA3Q99758 1704 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 FCHSD1Q86WN1 690 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 DNAAF5Q86Y56 855 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 CCDC47Q96A33 483 aaKnown RBP14.99□□□□□ -0.01
VPS54-203ENST00000409558 CNOT6LQ96LI5 555 aaKnown RBP14.99□□□□□ -0.01
VPS54-203ENST00000409558 L2HGDHQ9H9P8 463 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 RMND1Q9NWS8 449 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 TADA3O75528 432 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 GNA11P29992 359 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 CXCR5P32302 372 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 C4orf32Q8N8J7 132 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 JADE2Q9NQC1 790 aa14.99□□□□□ -0.01
VPS54-203ENST00000409558 CTAGE9A4FU28 777 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 IPO7O95373 1038 aaKnown RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 PNMA6AP0CW24 399 aaPredicted RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 CYP4A11Q02928 519 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 CDKAL1Q5VV42 579 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 CERS5Q8N5B7 392 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 RGS22Q8NE09 1264 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 SPATA20Q8TB22 786 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 RWDD2AQ9UIY3 292 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 BCL9LQ86UU0 1499 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 FEZ1Q99689 392 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 PKD2L1Q9P0L9 805 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 PALM3A6NDB9 673 aaPredicted RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 PPEF1O14829 653 aaPredicted RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 TNNT3P45378 269 aaPredicted RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 RCAN1P53805 252 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 TDRD12Q587J7 1177 aaKnown RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 SMARCAL1Q9NZC9 954 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 MKRN1Q9UHC7 482 aaKnown RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 MYH15Q9Y2K3 1946 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 PDHBP11177 359 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 MAPK8IP2Q13387 824 aaPredicted RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 KCNK18Q7Z418 384 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 IRF2BP1Q8IU81 584 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 GSPT2Q8IYD1 628 aaKnown RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 MTA3Q9BTC8 594 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.98□□□□□ -0.012e-10■■■■■ 72.1
VPS54-203ENST00000409558 EPN1Q9Y6I3 576 aaPredicted RBP14.98□□□□□ -0.01
VPS54-203ENST00000409558 PHLPP2Q6ZVD8 1323 aa14.98□□□□□ -0.01
VPS54-203ENST00000409558 FGRP09769 529 aa14.97□□□□□ -0.01
VPS54-203ENST00000409558 HOXA13P31271 388 aaPredicted RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms