RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 RNF26Q9BY78 433 aaPredicted RBP33.94■■■■□ 3.02
USP42-202ENST00000404008 CWC22Q9HCG8 908 aaKnown RBP33.94■■■■□ 3.02
USP42-202ENST00000404008 FBXO40Q9UH90 709 aa33.94■■■■□ 3.02
USP42-202ENST00000404008 CDKL5O76039 1030 aa33.93■■■■□ 3.02
USP42-202ENST00000404008 CTDNEP1O95476 244 aa33.93■■■■□ 3.02
USP42-202ENST00000404008 TRAF1Q13077 416 aa33.93■■■■□ 3.02
USP42-202ENST00000404008 MUM1L1Q5H9M0 696 aa33.93■■■■□ 3.02
USP42-202ENST00000404008 DHX30Q7L2E3 1194 aaKnown RBP eCLIP33.93■■■■□ 3.02
USP42-202ENST00000404008 SLC26A6Q9BXS9 759 aa33.93■■■■□ 3.02
USP42-202ENST00000404008 ACAD9Q9H845 621 aa33.93■■■■□ 3.02
USP42-202ENST00000404008 PCDHA1Q9Y5I3 950 aa33.93■■■■□ 3.02
USP42-202ENST00000404008 PPFIA3O75145 1194 aa33.92■■■■□ 3.02
USP42-202ENST00000404008 GNRH1P01148 92 aa33.92■■■■□ 3.02
USP42-202ENST00000404008 ARHGEF6Q15052 776 aa33.92■■■■□ 3.02
USP42-202ENST00000404008 COA7Q96BR5 231 aa33.92■■■■□ 3.02
USP42-202ENST00000404008 TMX3Q96JJ7 454 aa33.92■■■■□ 3.02
USP42-202ENST00000404008 RBM27Q9P2N5 1060 aaKnown RBP33.92■■■■□ 3.02
USP42-202ENST00000404008 STRNO43815 780 aa33.91■■■■□ 3.02
USP42-202ENST00000404008 PTPREP23469 700 aa33.91■■■■□ 3.02
USP42-202ENST00000404008 SSRP1Q08945 709 aaKnown RBP33.91■■■■□ 3.02
USP42-202ENST00000404008 CCDC83Q8IWF9 413 aa33.91■■■■□ 3.02
USP42-202ENST00000404008 CLEC4DQ8WXI8 215 aa33.91■■■■□ 3.02
USP42-202ENST00000404008 IVNS1ABPQ9Y6Y0 642 aa33.91■■■■□ 3.02
USP42-202ENST00000404008 TRIM22Q8IYM9 498 aa33.9■■■■□ 3.02
USP42-202ENST00000404008 FCER1AP12319 257 aa33.89■■■■□ 3.02
USP42-202ENST00000404008 AKAP17AQ02040 695 aaKnown RBP33.89■■■■□ 3.02
USP42-202ENST00000404008 GRB14Q14449 540 aa33.89■■■■□ 3.02
USP42-202ENST00000404008 PKN1Q16512 942 aa33.89■■■■□ 3.02
USP42-202ENST00000404008 PFKFB3Q16875 520 aaPredicted RBP33.89■■■■□ 3.02
USP42-202ENST00000404008 ABRAQ8N0Z2 381 aa33.89■■■■□ 3.02
USP42-202ENST00000404008 MMP19Q99542 508 aa33.89■■■■□ 3.02
USP42-202ENST00000404008 PRDM10Q9NQV6 1147 aa33.89■■■■□ 3.02
USP42-202ENST00000404008 MRPL11Q9Y3B7 192 aaKnown RBP33.89■■■■□ 3.02
USP42-202ENST00000404008 PLXNA1Q9UIW2 1896 aa33.89■■■■□ 3.02
USP42-202ENST00000404008 SLC15A5A6NIM6 579 aa33.88■■■■□ 3.01
USP42-202ENST00000404008 NFIBO00712 420 aa33.88■■■■□ 3.01
USP42-202ENST00000404008 MORN1Q5T089 497 aa33.88■■■■□ 3.01
USP42-202ENST00000404008 OTOP1Q7RTM1 612 aa33.88■■■■□ 3.01
USP42-202ENST00000404008 HEATR3Q7Z4Q2 680 aa33.88■■■■□ 3.01
USP42-202ENST00000404008 NSUN7Q8NE18 718 aaKnown RBP33.88■■■■□ 3.01
USP42-202ENST00000404008 GPKOWQ92917 476 aaPredicted RBP eCLIP33.88■■■■□ 3.01
USP42-202ENST00000404008 GJD2Q9UKL4 321 aa33.88■■■■□ 3.01
USP42-202ENST00000404008 STK36Q9NRP7 1315 aa33.88■■■■□ 3.01
USP42-202ENST00000404008 HTTP42858 3142 aa33.88■■■■□ 3.01
USP42-202ENST00000404008 SCG2P13521 617 aa33.87■■■■□ 3.01
USP42-202ENST00000404008 KCTD2Q14681 263 aa33.87■■■■□ 3.01
USP42-202ENST00000404008 WWC2Q6AWC2 1192 aa33.87■■■■□ 3.01
USP42-202ENST00000404008 SNX21Q969T3 373 aa33.87■■■■□ 3.01
USP42-202ENST00000404008 LCTP09848 1927 aa33.87■■■■□ 3.01
USP42-202ENST00000404008 HOXD10P28358 340 aa33.86■■■■□ 3.01
USP42-202ENST00000404008 SOCS4Q8WXH5 440 aa33.86■■■■□ 3.01
USP42-202ENST00000404008 A1CFQ9NQ94 594 aaKnown RBP33.86■■■■□ 3.01
USP42-202ENST00000404008 SRRDQ9UH36 339 aa33.86■■■■□ 3.01
USP42-202ENST00000404008 TRIM17Q9Y577 477 aa33.86■■■■□ 3.01
USP42-202ENST00000404008 hCG_1984214I3L0E3 225 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 OPLAHO14841 1288 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 DTNBO60941 627 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 DEXIO95424 95 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 ADORA2AP29274 412 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 PRKCZQ05513 592 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 ANKRD35Q8N283 1001 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 ZNF713Q8N859 430 aaPredicted RBP33.85■■■■□ 3.01
USP42-202ENST00000404008 USP6NLQ92738 828 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 NUDT12Q9BQG2 462 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 LLPHQ9BRT6 129 aaKnown RBP33.85■■■■□ 3.01
USP42-202ENST00000404008 BARHL2Q9NY43 387 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 GABRQQ9UN88 632 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 PTPDC1A2A3K4 754 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 RGS22Q8NE09 1264 aa33.85■■■■□ 3.01
USP42-202ENST00000404008 PFASO15067 1338 aa33.84■■■■□ 3.01
USP42-202ENST00000404008 STXBP3O00186 592 aa33.84■■■■□ 3.01
USP42-202ENST00000404008 NSMFQ6X4W1 530 aa33.84■■■■□ 3.01
USP42-202ENST00000404008 CYP39A1Q9NYL5 469 aa33.84■■■■□ 3.01
USP42-202ENST00000404008 JAK2O60674 1132 aa33.83■■■■□ 3.01
USP42-202ENST00000404008 FLT3LGP49771 235 aa33.83■■■■□ 3.01
USP42-202ENST00000404008 MAP2K5Q13163 448 aa33.83■■■■□ 3.01
USP42-202ENST00000404008 TYW1BQ6NUM6 668 aa33.83■■■■□ 3.01
USP42-202ENST00000404008 PPP1R18Q6NYC8 613 aa33.83■■■■□ 3.01
USP42-202ENST00000404008 CTU1Q7Z7A3 348 aaKnown RBP33.83■■■■□ 3.01
USP42-202ENST00000404008 SMARCC2Q8TAQ2 1214 aa33.83■■■■□ 3.01
USP42-202ENST00000404008 MAF1Q9H063 256 aa33.83■■■■□ 3.01
USP42-202ENST00000404008 DNAJC25-GNG10A0A024R161 153 aa33.82■■■■□ 3
USP42-202ENST00000404008 FDPSP14324 419 aaKnown RBP33.82■■■■□ 3
USP42-202ENST00000404008 PRMT2P55345 433 aa33.82■■■■□ 3
USP42-202ENST00000404008 MCF2L2Q86YR7 1114 aa33.82■■■■□ 3
USP42-202ENST00000404008 DDX11Q96FC9 970 aa33.82■■■■□ 3
USP42-202ENST00000404008 ORC3Q9UBD5 711 aaPredicted RBP33.82■■■■□ 3
USP42-202ENST00000404008 K7ELQ4 463 aaPredicted RBP33.81■■■■□ 3
USP42-202ENST00000404008 PGK2P07205 417 aa33.81■■■■□ 3
USP42-202ENST00000404008 NAPAP54920 295 aa33.81■■■■□ 3
USP42-202ENST00000404008 GHRHRQ02643 423 aa33.81■■■■□ 3
USP42-202ENST00000404008 RNF207Q6ZRF8 634 aa33.81■■■■□ 3
USP42-202ENST00000404008 TBC1D5Q92609 795 aa33.81■■■■□ 3
USP42-202ENST00000404008 COBLO75128 1261 aa33.8■■■■□ 3
USP42-202ENST00000404008 RGS2P41220 211 aa33.8■■■■□ 3
USP42-202ENST00000404008 BAATQ14032 418 aaPredicted RBP33.8■■■■□ 3
USP42-202ENST00000404008 SLC30A10Q6XR72 485 aa33.8■■■■□ 3
USP42-202ENST00000404008 DPP9Q86TI2 863 aa33.8■■■■□ 3
USP42-202ENST00000404008 HOXC6P09630 235 aa33.79■■■■□ 3
USP42-202ENST00000404008 RPS6P62753 249 aaKnown RBP33.79■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms