RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 A0A0G2JLW4 131 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 PSMD14O00487 310 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 TXNDC9O14530 226 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 MBD4O95243 580 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 PLTPP55058 493 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 TBC1D22AQ8WUA7 517 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 XAGE2Q96GT9 111 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 ATP6V0A4Q9HBG4 840 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 RBM12Q9NTZ6 932 aaKnown RBP10.23□□□□□ -0.77
COL28A1-201ENST00000399429 ARHGEF5Q12774 1597 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 NEURL1BA8MQ27 555 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 EYA2O00167 538 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 OPHN1O60890 802 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 ABL1P00519 1130 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 MYBL2P10244 700 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 ATP2A2P16615 1042 aaKnown RBP10.23□□□□□ -0.77
COL28A1-201ENST00000399429 TMEM266Q2M3C6 531 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 AKAP4Q5JQC9 854 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 MAEAQ7L5Y9 396 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 OTUD6AQ7L8S5 288 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 HEATR3Q7Z4Q2 680 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 MAGEB6Q8N7X4 407 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 PSMD1Q99460 953 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 CNOT10Q9H9A5 744 aaKnown RBP10.23□□□□□ -0.77
COL28A1-201ENST00000399429 DDX20Q9UHI6 824 aaKnown RBP10.23□□□□□ -0.77
COL28A1-201ENST00000399429 TRPC6Q9Y210 931 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 CCNHP51946 323 aaPredicted RBP10.23□□□□□ -0.77
COL28A1-201ENST00000399429 ZNF449Q6P9G9 518 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 HELBQ8NG08 1087 aaPredicted RBP10.23□□□□□ -0.77
COL28A1-201ENST00000399429 ETAA1Q9NY74 926 aa10.23□□□□□ -0.77
COL28A1-201ENST00000399429 FANCAO15360 1455 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 TSPY2A6NKD2 308 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 CREB3O43889 395 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 HOXB7P09629 217 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 EEF1GP26641 437 aaKnown RBP10.22□□□□□ -0.77
COL28A1-201ENST00000399429 CTCFP49711 727 aaPredicted RBP10.22□□□□□ -0.77
COL28A1-201ENST00000399429 BIRC3Q13489 604 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 PDCD2Q16342 344 aaPredicted RBP10.22□□□□□ -0.77
COL28A1-201ENST00000399429 ASIC2Q16515 512 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 THEMIS2Q5TEJ8 643 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 KCNV1Q6PIU1 500 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 FOXP4Q8IVH2 680 aaPredicted RBP10.22□□□□□ -0.77
COL28A1-201ENST00000399429 PARD3BQ8TEW8 1205 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 METTL22Q9BUU2 404 aaPredicted RBP10.22□□□□□ -0.77
COL28A1-201ENST00000399429 RAB34Q9BZG1 259 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 RAB17Q9H0T7 212 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 ECT2Q9H8V3 914 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 MADDQ8WXG6 1647 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 ADAMTS12P58397 1594 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 MMP1P03956 469 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 RAD23BP54727 409 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 GRIN1Q05586 938 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 CUL4BQ13620 913 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 PLCB4Q15147 1175 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 GLE1Q53GS7 698 aaKnown RBP10.22□□□□□ -0.77
COL28A1-201ENST00000399429 GDAP1Q8TB36 358 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 VCX3BQ9H321 246 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 VCX3AQ9NNX9 186 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 STRN4Q9NRL3 753 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 AGPAT5Q9NUQ2 364 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 INTS13Q9NVM9 706 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 MCM8Q9UJA3 840 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 PRAMEF22A3QJZ6 481 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 SEMA3EO15041 775 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 RASSF2P50749 326 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 POLR2FP61218 127 aaKnown RBP10.22□□□□□ -0.77
COL28A1-201ENST00000399429 EXOSC10Q01780 885 aaKnown RBP10.22□□□□□ -0.77
COL28A1-201ENST00000399429 MAP7Q14244 749 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 ANKLE2Q86XL3 938 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 NBPF3Q9H094 633 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 ARMT1Q9H993 441 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 BABAM1Q9NWV8 329 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 TRPM2O94759 1503 aa10.22□□□□□ -0.77
COL28A1-201ENST00000399429 OPLAHO14841 1288 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 BAG2O95816 211 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 SNRPA1P09661 255 aaKnown RBP10.21□□□□□ -0.77
COL28A1-201ENST00000399429 GNAT1P11488 350 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 HOXC9P31274 260 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 LRRC14Q15048 493 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 ZNF658Q5TYW1 1059 aaPredicted RBP10.21□□□□□ -0.77
COL28A1-201ENST00000399429 NBPF10Q6P3W6 841 aaKnown RBP10.21□□□□□ -0.77
COL28A1-201ENST00000399429 KDM7AQ6ZMT4 941 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 ZC3H18Q86VM9 953 aaKnown RBP10.21□□□□□ -0.77
COL28A1-201ENST00000399429 RETREG2Q8NC44 543 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 MDM1Q8TC05 714 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 KCNB2Q92953 911 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 ETNK1Q9HBU6 452 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 SLC39A2Q9NP94 309 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 PAPOLBQ9NRJ5 636 aaKnown RBP10.21□□□□□ -0.77
COL28A1-201ENST00000399429 FBXL5Q9UKA1 691 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 LAMC1P11047 1609 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 STXBP3O00186 592 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 PALMO75781 387 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 TBX2Q13207 712 aaPredicted RBP10.21□□□□□ -0.77
COL28A1-201ENST00000399429 LAMB3Q13751 1172 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 LETM2Q2VYF4 491 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 DCAF17Q5H9S7 520 aaPredicted RBP10.21□□□□□ -0.77
COL28A1-201ENST00000399429 CNNM4Q6P4Q7 775 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 P3H4Q92791 437 aa10.21□□□□□ -0.77
COL28A1-201ENST00000399429 LACRTQ9GZZ8 138 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms