RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 KLF18A0A0U1RQI7 1052 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 PPP1R11O60927 126 aaPredicted RBP15.54■□□□□ 0.08
VPS28-202ENST00000377348 IGHA2P01877 340 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 CCND3P30281 292 aaPredicted RBP15.54■□□□□ 0.08
VPS28-202ENST00000377348 CNTN2Q02246 1040 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 APOBRQ0VD83 1088 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 MFSD14CQ5VZR4 134 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 OLFML2BQ68BL8 750 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 APOA5Q6Q788 366 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 FBXO11Q86XK2 927 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 BRF1Q92994 677 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 MTMR8Q96EF0 704 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 FGD4Q96M96 766 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 PURBQ96QR8 312 aaKnown RBP15.54■□□□□ 0.08
VPS28-202ENST00000377348 MAP3K14Q99558 947 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 ZSWIM6Q9HCJ5 1215 aa15.54■□□□□ 0.08
VPS28-202ENST00000377348 NAP1L2Q9ULW6 460 aaPredicted RBP15.54■□□□□ 0.08
VPS28-202ENST00000377348 BAZ2BQ9UIF8 2168 aaKnown RBP15.53■□□□□ 0.08
VPS28-202ENST00000377348 RPTORQ8N122 1335 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 ZBTB5O15062 677 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 EN2P19622 333 aaPredicted RBP15.53■□□□□ 0.08
VPS28-202ENST00000377348 KIF5BP33176 963 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 PRAMEF19Q5SWL8 479 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 SYNE3Q6ZMZ3 975 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 RUFY3Q7L099 469 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 SRBD1Q8N5C6 995 aaKnown RBP15.53■□□□□ 0.08
VPS28-202ENST00000377348 FANCBQ8NB91 859 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 TRPV1Q8NER1 839 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 DEFB118Q96PH6 123 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.53■□□□□ 0.083e-6■■□□□ 14.1
VPS28-202ENST00000377348 HMX1Q9NP08 348 aaPredicted RBP15.53■□□□□ 0.08
VPS28-202ENST00000377348 CYP39A1Q9NYL5 469 aa15.53■□□□□ 0.08
VPS28-202ENST00000377348 DIS3Q9Y2L1 958 aaKnown RBP15.53■□□□□ 0.08
VPS28-202ENST00000377348 PFASO15067 1338 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 PTPDC1A2A3K4 754 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 SOWAHBA6NEL2 793 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 POTEB2H3BUK9 544 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 ZBTB43O43298 467 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 CALM1P0DP23 149 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 CALM2P0DP24 149 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 CALM3P0DP25 149 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 BAATQ14032 418 aaPredicted RBP15.52■□□□□ 0.08
VPS28-202ENST00000377348 SLC30A10Q6XR72 485 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 CCDC82Q8N4S0 544 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 TBC1D5Q92609 795 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 TINF2Q9BSI4 451 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 TM6SF1Q9BZW5 370 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 PAK6Q9NQU5 681 aaPredicted RBP15.52■□□□□ 0.08
VPS28-202ENST00000377348 PNMA2Q9UL42 364 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 CYP46A1Q9Y6A2 500 aa15.52■□□□□ 0.08
VPS28-202ENST00000377348 DDX49Q9Y6V7 483 aaKnown RBP15.52■□□□□ 0.08
VPS28-202ENST00000377348 ASTN1O14525 1302 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 ABCB11O95342 1321 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 PLXNA1Q9UIW2 1896 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 GOLGA8AA7E2F4 631 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 GOLGA8BA8MQT2 603 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 GJB1P08034 283 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 CALML3P27482 149 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 GNAQP50148 359 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 TMTC3Q6ZXV5 915 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 FAM133AQ8N9E0 248 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 U2AF1L4Q8WU68 220 aaKnown RBP15.51■□□□□ 0.07
VPS28-202ENST00000377348 SHISA4Q96DD7 197 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 LARP6Q9BRS8 491 aaKnown RBP15.51■□□□□ 0.07
VPS28-202ENST00000377348 SPZ1Q9BXG8 430 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 AMNQ9BXJ7 453 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 AGXT2Q9BYV1 514 aa15.51■□□□□ 0.07
VPS28-202ENST00000377348 PNMA6FA0A0J9YX94 578 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 hCG_1642624A0A1W2PR95 340 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 CYBAP13498 195 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 CNGA1P29973 690 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 CDC27P30260 824 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 GJA8P48165 433 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 ANAPC15P60006 121 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 RPS6P62753 249 aaKnown RBP15.5■□□□□ 0.07
VPS28-202ENST00000377348 TOB2Q14106 344 aaPredicted RBP15.5■□□□□ 0.07
VPS28-202ENST00000377348 RTN1Q16799 776 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 RNF207Q6ZRF8 634 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 FBXL16Q8N461 479 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 LZTS2Q9BRK4 669 aa15.5■□□□□ 0.07
VPS28-202ENST00000377348 FAM217BQ9NTX9 383 aaPredicted RBP15.5■□□□□ 0.07
VPS28-202ENST00000377348 OPLAHO14841 1288 aa15.49■□□□□ 0.07
VPS28-202ENST00000377348 EIF5BO60841 1220 aaKnown RBP15.49■□□□□ 0.07
VPS28-202ENST00000377348 SGPL1O95470 568 aa15.49■□□□□ 0.07
VPS28-202ENST00000377348 SNAI1O95863 264 aaPredicted RBP15.49■□□□□ 0.07
VPS28-202ENST00000377348 METAP2P50579 478 aaKnown RBP eCLIP15.49■□□□□ 0.07
VPS28-202ENST00000377348 ANO1Q5XXA6 986 aa15.49■□□□□ 0.07
VPS28-202ENST00000377348 MAMDC4Q6UXC1 1216 aa15.49■□□□□ 0.07
VPS28-202ENST00000377348 ARMCX2Q7L311 632 aa15.49■□□□□ 0.07
VPS28-202ENST00000377348 RRP36Q96EU6 259 aaKnown RBP15.49■□□□□ 0.07
VPS28-202ENST00000377348 PDRG1Q9NUG6 133 aa15.49■□□□□ 0.07
VPS28-202ENST00000377348 MRPL11Q9Y3B7 192 aaKnown RBP15.49■□□□□ 0.07
VPS28-202ENST00000377348 PCDHA1Q9Y5I3 950 aa15.49■□□□□ 0.07
VPS28-202ENST00000377348 RBBP6Q7Z6E9 1792 aaKnown RBP15.49■□□□□ 0.07
VPS28-202ENST00000377348 CNTNAP5Q8WYK1 1306 aa15.48■□□□□ 0.07
VPS28-202ENST00000377348 SMARCA1P28370 1054 aa15.48■□□□□ 0.07
VPS28-202ENST00000377348 ADD1P35611 737 aaKnown RBP15.48■□□□□ 0.07
VPS28-202ENST00000377348 FUT2Q10981 343 aa15.48■□□□□ 0.07
VPS28-202ENST00000377348 ZNF467Q7Z7K2 595 aaPredicted RBP15.48■□□□□ 0.07
VPS28-202ENST00000377348 RBM28Q9NW13 759 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms