RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 SH2D3CQ8N5H7 860 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 SPATA4Q8NEY3 305 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 TTYH3Q9C0H2 523 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 SNX12Q9UMY4 172 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 MYH6P13533 1939 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 NCK2O43639 380 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 SPA17Q15506 151 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 TTI2Q6NXR4 508 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 MMS22LQ6ZRQ5 1243 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 HPS3Q969F9 1004 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 DUSP9Q99956 384 aaKnown RBP15.26■□□□□ 0.03
USP49-201ENST00000373006 THAP9Q9H5L6 903 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 MTMR7Q9Y216 660 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 FAM205AQ6ZU69 1335 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 GRIN2DO15399 1336 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 ANO9A1A5B4 782 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 FRMD3A2A2Y4 597 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 USP17L12C9JPN9 530 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 USP17L21D6R901 530 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 KLRC4O43908 158 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 LONP1P36776 959 aaKnown RBP15.26■□□□□ 0.03
USP49-201ENST00000373006 UBA7P41226 1012 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 ZBED6P86452 979 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 PDCLQ13371 301 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 ANKRD40Q6AI12 368 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 C4orf32Q8N8J7 132 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 LRRC15Q8TF66 581 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 NOC4LQ9BVI4 516 aaKnown RBP15.26■□□□□ 0.03
USP49-201ENST00000373006 TMEM60Q9H2L4 133 aa15.26■□□□□ 0.03
USP49-201ENST00000373006 ALS2Q96Q42 1657 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 SHTN1A0MZ66 631 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 EIF3HO15372 352 aaKnown RBP eCLIP15.25■□□□□ 0.03
USP49-201ENST00000373006 ZEB2O60315 1214 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 GYG1P46976 350 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 DNA2P51530 1060 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 VAV2P52735 878 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 IQCEQ6IPM2 695 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 DTHD1Q6ZMT9 781 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 C2CD5Q86YS7 1000 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 AMOTL1Q8IY63 956 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 CNOT6LQ96LI5 555 aaKnown RBP15.25■□□□□ 0.03
USP49-201ENST00000373006 PYM1Q9BRP8 204 aaKnown RBP15.25■□□□□ 0.03
USP49-201ENST00000373006 IFIH1Q9BYX4 1025 aaKnown RBP15.25■□□□□ 0.03
USP49-201ENST00000373006 CPP00450 1065 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 TTMPQ5BVD1 217 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 CCDC91Q7Z6B0 441 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 DZIP3Q86Y13 1208 aaKnown RBP15.25■□□□□ 0.03
USP49-201ENST00000373006 CCDC170Q8IYT3 715 aa15.25■□□□□ 0.03
USP49-201ENST00000373006 JPH2Q9BR39 696 aaPredicted RBP15.25■□□□□ 0.03
USP49-201ENST00000373006 FAM207AQ9NSI2 230 aaPredicted RBP15.25■□□□□ 0.03
USP49-201ENST00000373006 CLGNO14967 610 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 ZPR1O75312 459 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 KRT14P02533 472 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 CCDC178Q5BJE1 867 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 CCDC181Q5TID7 509 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 BRINP3Q76B58 766 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 SLC4A9Q96Q91 983 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 RUFY1Q96T51 708 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 TNS2Q63HR2 1409 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 CCDC172P0C7W6 258 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 FCER1AP12319 257 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 STK4Q13043 487 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 GIMAP8Q8ND71 665 aaPredicted RBP15.24■□□□□ 0.03
USP49-201ENST00000373006 PURBQ96QR8 312 aaKnown RBP15.24■□□□□ 0.03
USP49-201ENST00000373006 ANAPC4Q9UJX5 808 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 SUFUQ9UMX1 484 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 EPHB6O15197 1021 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 TACC1O75410 805 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 CALM1P0DP23 149 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 CALM2P0DP24 149 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 CALM3P0DP25 149 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 TRAPPC10P48553 1259 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 SUSD4Q5VX71 490 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 MMGT1Q8N4V1 131 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 TRIM58Q8NG06 486 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 OSBPL9Q96SU4 736 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 SLAIN2Q9P270 581 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 CEP83Q9Y592 693 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 PCDHA13Q9Y5I0 950 aa15.24■□□□□ 0.03
USP49-201ENST00000373006 MYH2Q9UKX2 1941 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 NDUFAB1O14561 156 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 INPP5BP32019 993 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 PDE4DQ08499 809 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 PFKFB3Q16875 520 aaPredicted RBP15.23■□□□□ 0.03
USP49-201ENST00000373006 ZNF662Q6ZS27 426 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 BLIDQ8IZY5 108 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 MS4A14Q96JA4 679 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 RIOK1Q9BRS2 568 aaKnown RBP15.23■□□□□ 0.03
USP49-201ENST00000373006 FAM107BQ9H098 131 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 ARHGAP20Q9P2F6 1191 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 ESYT3A0FGR9 886 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 USO1O60763 962 aaKnown RBP15.23■□□□□ 0.03
USP49-201ENST00000373006 HNRNPH1P31943 449 aaKnown RBP15.23■□□□□ 0.03
USP49-201ENST00000373006 PPP2R5AQ15172 486 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 INF2Q27J81 1249 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 ARL6IP4Q66PJ3 421 aaKnown RBP15.23■□□□□ 0.03
USP49-201ENST00000373006 NUP58Q9BVL2 599 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 UBR2Q8IWV8 1755 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 TIAM2Q8IVF5 1701 aa15.23■□□□□ 0.03
USP49-201ENST00000373006 GOLGA8KD6RF30 607 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms