RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PPP2R5CQ13362 524 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 TRIML1Q8N9V2 468 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 FAM49AQ9H0Q0 323 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-204ENST00000367248 CLCN1P35523 988 aa12.81□□□□□ -0.36
SYNE1-204ENST00000367248 KIF23Q02241 960 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-204ENST00000367248 ZEB2O60315 1214 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 CFAP58Q5T655 872 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 TSGA10Q9BZW7 698 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 CRKP46108 304 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 KLHL30Q0D2K2 578 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 NFX1Q12986 1120 aaKnown RBP12.8□□□□□ -0.36
SYNE1-204ENST00000367248 ZNF827Q17R98 1081 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 FAM178BQ8IXR5 827 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 TTC14Q96N46 770 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 ARFGAP3Q9NP61 516 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 ADD3Q9UEY8 706 aaKnown RBP12.8□□□□□ -0.36
SYNE1-204ENST00000367248 SMIM23A6NLE4 172 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 LAD1O00515 517 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 DLATP10515 647 aaKnown RBP12.8□□□□□ -0.36
SYNE1-204ENST00000367248 SNX16P57768 344 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 RNASE9P60153 205 aaKnown RBP12.8□□□□□ -0.36
SYNE1-204ENST00000367248 SEL1L2Q5TEA6 688 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 TMEM179Q6ZVK1 233 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 ZBTB33Q86T24 672 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 CCDC25Q86WR0 208 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 TTC30AQ86WT1 665 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 KIF1BO60333 1816 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 INO80B-WBP1J3KQ70 363 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 PRPF3O43395 683 aaKnown RBP12.8□□□□□ -0.36
SYNE1-204ENST00000367248 HSF2BPO75031 334 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 GH2P01242 217 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 ASNSP08243 561 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 RC3H1Q5TC82 1133 aaKnown RBP12.8□□□□□ -0.36
SYNE1-204ENST00000367248 USP17L2Q6R6M4 530 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 INO80BQ9C086 356 aaPredicted RBP12.8□□□□□ -0.36
SYNE1-204ENST00000367248 CTTNBP2NLQ9P2B4 639 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 A0A1W2PRG0 241 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 GNA14O95837 355 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 RSPH3Q86UC2 560 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 FAM160B2Q86V87 743 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 SYMPKQ92797 1274 aaKnown RBP12.8□□□□□ -0.36
SYNE1-204ENST00000367248 ATP6V0A1Q93050 837 aa12.8□□□□□ -0.36
SYNE1-204ENST00000367248 FERP16591 822 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 CALCOCO2Q13137 446 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 CUL4AQ13619 759 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 GOLGA5Q8TBA6 731 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 MRRFQ96E11 262 aaKnown RBP12.79□□□□□ -0.36
SYNE1-204ENST00000367248 SH3BP5O60239 455 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 SYDE2Q5VT97 1194 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 IQCDQ96DY2 449 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 FAM207AQ9NSI2 230 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-204ENST00000367248 ARMCX3Q9UH62 379 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-204ENST00000367248 BCRP11274 1271 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 CLIC4Q9Y696 253 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 FAM169AQ9Y6X4 670 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 K7ENM7 598 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 XRCC5P13010 732 aaKnown RBP12.79□□□□□ -0.36
SYNE1-204ENST00000367248 TUBB4BP68371 445 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 LRCH2Q5VUJ6 765 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 ARHGAP6O43182 974 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 EIF2AK2P19525 551 aaKnown RBP12.79□□□□□ -0.36
SYNE1-204ENST00000367248 ZNF157P51786 506 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-204ENST00000367248 STAT2P52630 851 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 FAM160B1Q5W0V3 765 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 BARGINQ6ZT62 677 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 NLRP7Q8WX94 980 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 CAPN15O75808 1086 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 HOXA13P31271 388 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-204ENST00000367248 OSTNP61366 133 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 SP8Q8IXZ3 490 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 CCDC127Q96BQ5 260 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 COA7Q96BR5 231 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 IQCGQ9H095 443 aaKnown RBP12.79□□□□□ -0.36
SYNE1-204ENST00000367248 MAGEF1Q9HAY2 307 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 TXNDC16Q9P2K2 825 aa12.79□□□□□ -0.36
SYNE1-204ENST00000367248 MADDQ8WXG6 1647 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 E7EVH7 732 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 TBCKQ8TEA7 893 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 WDR11Q9BZH6 1224 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 NUCKS1Q9H1E3 243 aaKnown RBP12.78□□□□□ -0.36
SYNE1-204ENST00000367248 POLR3EQ9NVU0 708 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 PTPRMP28827 1452 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 DCUN1D2Q6PH85 259 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 C4orf50Q6ZRC1 276 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 SH3RF3Q8TEJ3 882 aaPredicted RBP12.78□□□□□ -0.36
SYNE1-204ENST00000367248 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.78□□□□□ -0.36
SYNE1-204ENST00000367248 NLRC4Q9NPP4 1024 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 INCENPQ9NQS7 918 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 RABGAP1Q9Y3P9 1069 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 IQCA1LA6NCM1 817 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 ZSCAN20P17040 1043 aaPredicted RBP12.78□□□□□ -0.36
SYNE1-204ENST00000367248 KIAA1024Q9UPX6 916 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 DYNC1I1O14576 645 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 CYP2D6P10635 497 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 FAM107BQ9H098 131 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 ZBTB12Q9Y330 459 aaPredicted RBP12.78□□□□□ -0.36
SYNE1-204ENST00000367248 DLC1Q96QB1 1528 aa12.78□□□□□ -0.36
SYNE1-204ENST00000367248 VAV2P52735 878 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 CDC37Q16543 378 aaPredicted RBP12.77□□□□□ -0.36
SYNE1-204ENST00000367248 RABL6Q3YEC7 729 aaPredicted RBP12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms