RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 JMJD4Q9H9V9 463 aa19.74■□□□□ 0.75
CLN3-203ENST00000357806 QRICH1Q2TAL8 776 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 USH1GQ495M9 461 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 MSL3Q8N5Y2 521 aaKnown RBP19.73■□□□□ 0.75
CLN3-203ENST00000357806 TINF2Q9BSI4 451 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 VAT1LQ9HCJ6 419 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 POTEB2H3BUK9 544 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 SGPL1O95470 568 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 CAPN2P17655 700 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 CCND3P30281 292 aaPredicted RBP19.73■□□□□ 0.75
CLN3-203ENST00000357806 FGD1P98174 961 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 NSMFQ6X4W1 530 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 SYNE3Q6ZMZ3 975 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 ZNF467Q7Z7K2 595 aaPredicted RBP19.73■□□□□ 0.75
CLN3-203ENST00000357806 SHISA4Q96DD7 197 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 CYP39A1Q9NYL5 469 aa19.73■□□□□ 0.75
CLN3-203ENST00000357806 MKI67P46013 3256 aaKnown RBP19.72■□□□□ 0.75
CLN3-203ENST00000357806 ABCB11O95342 1321 aa19.72■□□□□ 0.75
CLN3-203ENST00000357806 NFIBO00712 420 aa19.72■□□□□ 0.75
CLN3-203ENST00000357806 CYBAP13498 195 aa19.72■□□□□ 0.75
CLN3-203ENST00000357806 CASTP20810 708 aaKnown RBP19.72■□□□□ 0.75
CLN3-203ENST00000357806 MICU3Q86XE3 530 aa19.72■□□□□ 0.75
CLN3-203ENST00000357806 FBXO11Q86XK2 927 aa19.72■□□□□ 0.75
CLN3-203ENST00000357806 MTMR8Q96EF0 704 aa19.72■□□□□ 0.75
CLN3-203ENST00000357806 RIOX1Q9H6W3 641 aa19.72■□□□□ 0.75
CLN3-203ENST00000357806 SYNGAP1Q96PV0 1343 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 KIAA1217Q5T5P2 1943 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 ZBTB5O15062 677 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 RXRAP19793 462 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 RPS6KB1P23443 525 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 GNAQP50148 359 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 MLLT1Q03111 559 aaPredicted RBP19.71■□□□□ 0.75
CLN3-203ENST00000357806 APOA5Q6Q788 366 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 MAMDC4Q6UXC1 1216 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 HOMER1Q86YM7 354 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 FAM133AQ8N9E0 248 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 CLEC4DQ8WXI8 215 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 LZTS2Q9BRK4 669 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 AMNQ9BXJ7 453 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 NRBP1Q9UHY1 535 aa19.71■□□□□ 0.75
CLN3-203ENST00000357806 PTPDC1A2A3K4 754 aa19.7■□□□□ 0.74
CLN3-203ENST00000357806 CYTH3O43739 400 aa19.7■□□□□ 0.74
CLN3-203ENST00000357806 MSCO60682 206 aa19.7■□□□□ 0.74
CLN3-203ENST00000357806 CPA1P15085 419 aa19.7■□□□□ 0.74
CLN3-203ENST00000357806 CNGA1P29973 690 aa19.7■□□□□ 0.74
CLN3-203ENST00000357806 FGD4Q96M96 766 aa19.7■□□□□ 0.74
CLN3-203ENST00000357806 SPZ1Q9BXG8 430 aa19.7■□□□□ 0.74
CLN3-203ENST00000357806 CRISPLD2Q9H0B8 497 aa19.7■□□□□ 0.74
CLN3-203ENST00000357806 TFRCP02786 760 aaKnown RBP19.69■□□□□ 0.74
CLN3-203ENST00000357806 SMARCA1P28370 1054 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 CNTN2Q02246 1040 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 TRAF1Q13077 416 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 RNF207Q6ZRF8 634 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 Q6ZUG5 572 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 RAB11FIP4Q86YS3 637 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 CCDC144CPQ8IYA2 1237 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 TRPV1Q8NER1 839 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 CNPY2Q9Y2B0 182 aa19.69■□□□□ 0.74
CLN3-203ENST00000357806 MRPL11Q9Y3B7 192 aaKnown RBP19.69■□□□□ 0.74
CLN3-203ENST00000357806 ALPK3Q96L96 1907 aa19.68■□□□□ 0.74
CLN3-203ENST00000357806 ZBTB43O43298 467 aa19.68■□□□□ 0.74
CLN3-203ENST00000357806 BAATQ14032 418 aaPredicted RBP19.68■□□□□ 0.74
CLN3-203ENST00000357806 SLC35G1Q2M3R5 365 aa19.68■□□□□ 0.74
CLN3-203ENST00000357806 SLC30A10Q6XR72 485 aa19.68■□□□□ 0.74
CLN3-203ENST00000357806 RUFY3Q7L099 469 aa19.68■□□□□ 0.74
CLN3-203ENST00000357806 FANCBQ8NB91 859 aa19.68■□□□□ 0.74
CLN3-203ENST00000357806 PIGSQ96S52 555 aa19.68■□□□□ 0.74
CLN3-203ENST00000357806 MAF1Q9H063 256 aa19.68■□□□□ 0.74
CLN3-203ENST00000357806 RBM28Q9NW13 759 aaKnown RBP19.68■□□□□ 0.74
CLN3-203ENST00000357806 DDX20Q9UHI6 824 aaKnown RBP19.68■□□□□ 0.74
CLN3-203ENST00000357806 TNRC18O15417 2968 aaPredicted RBP19.68■□□□□ 0.74
CLN3-203ENST00000357806 KLF18A0A0U1RQI7 1052 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 SEPT4O43236 478 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 PLEKHA8P1O95397 391 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 RCAN1P53805 252 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 PRAMEF19Q5SWL8 479 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 MCF2L2Q86YR7 1114 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 FBXL16Q8N461 479 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 TM6SF1Q9BZW5 370 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 ZSWIM6Q9HCJ5 1215 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 ADD3Q9UEY8 706 aaKnown RBP19.67■□□□□ 0.74
CLN3-203ENST00000357806 BRPF3Q9ULD4 1205 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 PNMA6FA0A0J9YX94 578 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 SOWAHBA6NEL2 793 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 ASB14A6NK59 587 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 PPP1R11O60927 126 aaPredicted RBP19.67■□□□□ 0.74
CLN3-203ENST00000357806 CALML3P27482 149 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 RPS6P62753 249 aaKnown RBP19.67■□□□□ 0.74
CLN3-203ENST00000357806 ARMCX2Q7L311 632 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 ANKLE1Q8NAG6 615 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 RGS22Q8NE09 1264 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 BRF1Q92994 677 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 RRP36Q96EU6 259 aaKnown RBP19.67■□□□□ 0.74
CLN3-203ENST00000357806 AGXT2Q9BYV1 514 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.67■□□□□ 0.74
CLN3-203ENST00000357806 SEC63Q9UGP8 760 aaKnown RBP19.67■□□□□ 0.74
CLN3-203ENST00000357806 OGDHLQ9ULD0 1010 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 CYP46A1Q9Y6A2 500 aa19.67■□□□□ 0.74
CLN3-203ENST00000357806 FARP2O94887 1054 aaPredicted RBP19.66■□□□□ 0.74
CLN3-203ENST00000357806 ANAPC15P60006 121 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms