RNA–Protein interactions for RNA: ENST00000357207.8

TRAPPC11-202, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best) BASIC

Gene TRAPPC11, Length 4,435 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-202ENST00000357207 ARHGEF25Q86VW2 580 aa17.13■□□□□ 0.33
TRAPPC11-202ENST00000357207 TPH2Q8IWU9 490 aa17.13■□□□□ 0.33
TRAPPC11-202ENST00000357207 VPS37BQ9H9H4 285 aa17.13■□□□□ 0.33
TRAPPC11-202ENST00000357207 USH1GQ495M9 461 aa17.13■□□□□ 0.33
TRAPPC11-202ENST00000357207 RASGRP4Q8TDF6 673 aa17.13■□□□□ 0.33
TRAPPC11-202ENST00000357207 INTS9Q9NV88 658 aaKnown RBP17.13■□□□□ 0.33
TRAPPC11-202ENST00000357207 MLH3Q9UHC1 1453 aa17.13■□□□□ 0.33
TRAPPC11-202ENST00000357207 CFBP00751 764 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 PSMC4P43686 418 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 VPS41P49754 854 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 PSTPIP2Q9H939 334 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 EFCC1Q9HA90 598 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 SEMA3EO15041 775 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 NNTQ13423 1086 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 ALS2CLQ60I27 953 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 TOGARAM2Q6ZUX3 1019 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 CCDC197Q8NCU1 140 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 LARP4BQ92615 738 aaKnown RBP17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 VCX3BQ9H321 246 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 NHEJ1Q9H9Q4 299 aaPredicted RBP17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 MAP3K15Q6ZN16 1313 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 TROVE2P10155 538 aaKnown RBP eCLIP17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 LGSNQ5TDP6 509 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 CCDC24Q8N4L8 307 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 ABCC12Q96J65 1359 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 GCKP35557 465 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 PPP1R21Q6ZMI0 780 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 SDCCAG8Q86SQ7 713 aaPredicted RBP17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 KCNF1Q9H3M0 494 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 ARHGEF10LQ9HCE6 1279 aa17.12■□□□□ 0.33
TRAPPC11-202ENST00000357207 EIF4A3P38919 411 aaKnown RBP17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 IFNAR2P48551 515 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 TRAPPC3LQ5T215 181 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.11■□□□□ 0.331e-7■■■■□ 19.5
TRAPPC11-202ENST00000357207 CCDC97Q96F63 343 aaPredicted RBP17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 RBM17Q96I25 401 aaKnown RBP17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 CHRNDQ07001 517 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 TTLL12Q14166 644 aaPredicted RBP17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 TBC1D22AQ8WUA7 517 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 P3H4Q92791 437 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 CDCA7Q9BWT1 371 aaPredicted RBP17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 FAM114A2Q9NRY5 505 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 PCDHA4Q9UN74 947 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 COL4A3BPQ9Y5P4 624 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 DDX39AO00148 427 aaKnown RBP17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 PRKAB2O43741 272 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 IFNB1P01574 187 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 EMBQ6PCB8 327 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 RUNDC3BQ96NL0 473 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 RIC8AQ9NPQ8 531 aa17.11■□□□□ 0.33
TRAPPC11-202ENST00000357207 ANKRD65E5RJM6 399 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 MOCS3O95396 460 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 ADCY8P40145 1251 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 MAGEA9P43362 315 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 RAB3IPQ96QF0 476 aaPredicted RBP17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 THAP9Q9H5L6 903 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 DAAM1Q9Y4D1 1078 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 I3L4J1 428 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 PGRMC1O00264 195 aaKnown RBP17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 PRPF3O43395 683 aaKnown RBP17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 SUN1O94901 812 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 TCP11X2Q5H9J9 407 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 TBC1D31Q96DN5 1066 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 ARHGAP31Q2M1Z3 1444 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 DKC1O60832 514 aaKnown RBP eCLIP17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 ARL1P40616 181 aaPredicted RBP17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 E2F4Q16254 413 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 PRR16Q569H4 304 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 EPHA10Q5JZY3 1008 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 MAGOHBQ96A72 148 aaKnown RBP17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 PSMD1Q99460 953 aa17.1■□□□□ 0.33
TRAPPC11-202ENST00000357207 NDC80O14777 642 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 CCDC13Q8IYE1 715 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 ALDH8A1Q9H2A2 487 aaPredicted RBP17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 DDX25Q9UHL0 483 aaKnown RBP17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 SOS2Q07890 1332 aaPredicted RBP17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 THAP12O43422 761 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 GAS7O60861 476 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 IGKV5-2P06315 115 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 TRPC3Q13507 836 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 RBM26Q5T8P6 1007 aaKnown RBP17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 GJA10Q969M2 543 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 IWS1Q96ST2 819 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 MED14O60244 1454 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 KIF1BO60333 1816 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 CTNND1O60716 968 aaKnown RBP17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 FTCDO95954 541 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 NR1D1P20393 614 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 NR2F2P24468 414 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 ITIH3Q06033 890 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 STRN3Q13033 797 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 PHLDB2Q86SQ0 1253 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 FAM178BQ8IXR5 827 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 DDX17Q92841 729 aaKnown RBP17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 EPC1Q9H2F5 836 aa17.09■□□□□ 0.33
TRAPPC11-202ENST00000357207 MB21D1Q8N884 522 aa17.08■□□□□ 0.33
TRAPPC11-202ENST00000357207 SMCR8Q8TEV9 937 aaPredicted RBP17.08■□□□□ 0.33
TRAPPC11-202ENST00000357207 TCP11Q8WWU5 503 aa17.08■□□□□ 0.33
TRAPPC11-202ENST00000357207 KIFC2Q96AC6 838 aa17.08■□□□□ 0.33
TRAPPC11-202ENST00000357207 ATP8A1Q9Y2Q0 1164 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms