RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 GABRQQ9UN88 632 aa25.63■■□□□ 1.69
SHMT1-203ENST00000354098 TRIM17Q9Y577 477 aa25.63■■□□□ 1.69
SHMT1-203ENST00000354098 NFIBO00712 420 aa25.62■■□□□ 1.69
SHMT1-203ENST00000354098 PRPF3O43395 683 aaKnown RBP25.62■■□□□ 1.69
SHMT1-203ENST00000354098 OTOP1Q7RTM1 612 aa25.62■■□□□ 1.69
SHMT1-203ENST00000354098 GPKOWQ92917 476 aaPredicted RBP eCLIP25.62■■□□□ 1.69
SHMT1-203ENST00000354098 TMX3Q96JJ7 454 aa25.62■■□□□ 1.69
SHMT1-203ENST00000354098 ACAD9Q9H845 621 aa25.62■■□□□ 1.69
SHMT1-203ENST00000354098 PNMA2Q9UL42 364 aa25.62■■□□□ 1.69
SHMT1-203ENST00000354098 IVNS1ABPQ9Y6Y0 642 aa25.62■■□□□ 1.69
SHMT1-203ENST00000354098 ABCB11O95342 1321 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 MCM2P49736 904 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 PRKCZQ05513 592 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 PKN1Q16512 942 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 CPLX2Q6PUV4 134 aaKnown RBP25.61■■□□□ 1.69
SHMT1-203ENST00000354098 MMP19Q99542 508 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 RNF26Q9BY78 433 aaPredicted RBP25.61■■□□□ 1.69
SHMT1-203ENST00000354098 SH2B1Q9NRF2 756 aaPredicted RBP25.61■■□□□ 1.69
SHMT1-203ENST00000354098 FBXO40Q9UH90 709 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 MYH6P13533 1939 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 STRNO43815 780 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 FCER1AP12319 257 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 SSRP1Q08945 709 aaKnown RBP25.61■■□□□ 1.69
SHMT1-203ENST00000354098 MORN1Q5T089 497 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 PRDM10Q9NQV6 1147 aa25.61■■□□□ 1.69
SHMT1-203ENST00000354098 OPLAHO14841 1288 aa25.6■■□□□ 1.69
SHMT1-203ENST00000354098 GRB14Q14449 540 aa25.6■■□□□ 1.69
SHMT1-203ENST00000354098 WWC2Q6AWC2 1192 aa25.6■■□□□ 1.69
SHMT1-203ENST00000354098 HEATR3Q7Z4Q2 680 aa25.6■■□□□ 1.69
SHMT1-203ENST00000354098 TBC1D5Q92609 795 aa25.6■■□□□ 1.69
SHMT1-203ENST00000354098 SRRDQ9UH36 339 aa25.6■■□□□ 1.69
SHMT1-203ENST00000354098 DOCK3Q8IZD9 2030 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 SLC15A5A6NIM6 579 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 GNRH1P01148 92 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 PGK2P07205 417 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 ADORA2AP29274 412 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 FLT3LGP49771 235 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 AKAP17AQ02040 695 aaKnown RBP25.59■■□□□ 1.69
SHMT1-203ENST00000354098 KCTD2Q14681 263 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 ARHGEF6Q15052 776 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 PFKFB3Q16875 520 aaPredicted RBP25.59■■□□□ 1.69
SHMT1-203ENST00000354098 ANKRD35Q8N283 1001 aa25.59■■□□□ 1.69
SHMT1-203ENST00000354098 NSUN7Q8NE18 718 aaKnown RBP25.59■■□□□ 1.69
SHMT1-203ENST00000354098 A1CFQ9NQ94 594 aaKnown RBP25.59■■□□□ 1.69
SHMT1-203ENST00000354098 MRPL11Q9Y3B7 192 aaKnown RBP25.59■■□□□ 1.69
SHMT1-203ENST00000354098 CDKL5O76039 1030 aa25.58■■□□□ 1.69
SHMT1-203ENST00000354098 NSMFQ6X4W1 530 aa25.58■■□□□ 1.69
SHMT1-203ENST00000354098 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.58■■□□□ 1.69
SHMT1-203ENST00000354098 TRIM22Q8IYM9 498 aa25.58■■□□□ 1.69
SHMT1-203ENST00000354098 USP6NLQ92738 828 aa25.58■■□□□ 1.69
SHMT1-203ENST00000354098 NUDT12Q9BQG2 462 aa25.58■■□□□ 1.69
SHMT1-203ENST00000354098 PLXNB2O15031 1838 aa25.58■■□□□ 1.69
SHMT1-203ENST00000354098 JAK2O60674 1132 aa25.58■■□□□ 1.68
SHMT1-203ENST00000354098 COBLO75128 1261 aa25.58■■□□□ 1.68
SHMT1-203ENST00000354098 SCG2P13521 617 aa25.58■■□□□ 1.68
SHMT1-203ENST00000354098 HOXD10P28358 340 aa25.58■■□□□ 1.68
SHMT1-203ENST00000354098 TYW1BQ6NUM6 668 aa25.58■■□□□ 1.68
SHMT1-203ENST00000354098 ABRAQ8N0Z2 381 aa25.58■■□□□ 1.68
SHMT1-203ENST00000354098 CTU1Q7Z7A3 348 aaKnown RBP25.57■■□□□ 1.68
SHMT1-203ENST00000354098 DDX11Q96FC9 970 aa25.57■■□□□ 1.68
SHMT1-203ENST00000354098 CYP39A1Q9NYL5 469 aa25.57■■□□□ 1.68
SHMT1-203ENST00000354098 RBM27Q9P2N5 1060 aaKnown RBP25.57■■□□□ 1.68
SHMT1-203ENST00000354098 PTPDC1A2A3K4 754 aa25.56■■□□□ 1.68
SHMT1-203ENST00000354098 FDPSP14324 419 aaKnown RBP25.56■■□□□ 1.68
SHMT1-203ENST00000354098 CYP2B6P20813 491 aa25.56■■□□□ 1.68
SHMT1-203ENST00000354098 TRAF1Q13077 416 aa25.56■■□□□ 1.68
SHMT1-203ENST00000354098 MAP2K5Q13163 448 aa25.56■■□□□ 1.68
SHMT1-203ENST00000354098 BAATQ14032 418 aaPredicted RBP25.56■■□□□ 1.68
SHMT1-203ENST00000354098 SOCS4Q8WXH5 440 aa25.56■■□□□ 1.68
SHMT1-203ENST00000354098 AIFM3Q96NN9 605 aa25.56■■□□□ 1.68
SHMT1-203ENST00000354098 STXBP3O00186 592 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 DEXIO95424 95 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 SLC30A10Q6XR72 485 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 DPP9Q86TI2 863 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 PURBQ96QR8 312 aaKnown RBP25.55■■□□□ 1.68
SHMT1-203ENST00000354098 BARHL2Q9NY43 387 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 DNAJC25-GNG10A0A024R161 153 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 RNF207Q6ZRF8 634 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 NPLOC4Q8TAT6 608 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 SNX21Q969T3 373 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 SHISA4Q96DD7 197 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 ORC3Q9UBD5 711 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-203ENST00000354098 PTPN22Q9Y2R2 807 aa25.55■■□□□ 1.68
SHMT1-203ENST00000354098 CFBP00751 764 aa25.54■■□□□ 1.68
SHMT1-203ENST00000354098 CALML3P27482 149 aa25.54■■□□□ 1.68
SHMT1-203ENST00000354098 RGS2P41220 211 aa25.54■■□□□ 1.68
SHMT1-203ENST00000354098 NAPAP54920 295 aa25.54■■□□□ 1.68
SHMT1-203ENST00000354098 RPS6P62753 249 aaKnown RBP25.54■■□□□ 1.68
SHMT1-203ENST00000354098 CNTN2Q02246 1040 aa25.54■■□□□ 1.68
SHMT1-203ENST00000354098 RGS22Q8NE09 1264 aa25.54■■□□□ 1.68
SHMT1-203ENST00000354098 PFASO15067 1338 aa25.53■■□□□ 1.68
SHMT1-203ENST00000354098 STK36Q9NRP7 1315 aa25.53■■□□□ 1.68
SHMT1-203ENST00000354098 MCF2L2Q86YR7 1114 aa25.53■■□□□ 1.68
SHMT1-203ENST00000354098 LLPHQ9BRT6 129 aaKnown RBP25.53■■□□□ 1.68
SHMT1-203ENST00000354098 VPS54Q9P1Q0 977 aa25.53■■□□□ 1.68
SHMT1-203ENST00000354098 PTCH2Q9Y6C5 1203 aa25.53■■□□□ 1.68
SHMT1-203ENST00000354098 hCG_1984214I3L0E3 225 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 CCL14Q16627 93 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 ZNF792Q3KQV3 632 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 ZNF713Q8N859 430 aaPredicted RBP25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms