RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 POSTNQ15063 836 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 DPCR1Q3MIW9 517 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 TUBE1Q9UJT0 475 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 EPS15P42566 896 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 ISM2Q6H9L7 571 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 ELOA2Q8IYF1 753 aaPredicted RBP15.2■□□□□ 0.02
HMGB1-202ENST00000339872 GRAMD1CQ8IYS0 662 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 GLT8D2Q9H1C3 349 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 GGA3Q9NZ52 723 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 RNF181Q9P0P0 153 aa15.2■□□□□ 0.02
HMGB1-202ENST00000339872 OR52Z1P0C646 297 aa15.19■□□□□ 0.02
HMGB1-202ENST00000339872 PRPHP41219 470 aa15.19■□□□□ 0.02
HMGB1-202ENST00000339872 NLRP12P59046 1061 aa15.19■□□□□ 0.02
HMGB1-202ENST00000339872 MDM2Q00987 491 aaPredicted RBP15.19■□□□□ 0.02
HMGB1-202ENST00000339872 DCAF15Q66K64 600 aa15.19■□□□□ 0.02
HMGB1-202ENST00000339872 KANK3Q6NY19 840 aa15.19■□□□□ 0.02
HMGB1-202ENST00000339872 NAT10Q9H0A0 1025 aaKnown RBP15.19■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L15C9J2P7 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L13C9JLJ4 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L11C9JVI0 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L18D6R9N7 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L22D6RA61 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L17D6RBQ6 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L19D6RCP7 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L20D6RJB6 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 ADCY5O95622 1261 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 PRR29P0C7W0 189 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 YBX3P16989 372 aaKnown RBP eCLIP15.18■□□□□ 0.026e-17■■□□□ 12.5
HMGB1-202ENST00000339872 TAL1P17542 331 aaPredicted RBP15.18■□□□□ 0.02
HMGB1-202ENST00000339872 TXLNAP40222 546 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L24Q0WX57 530 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 ORC2Q13416 577 aaPredicted RBP15.18■□□□□ 0.02
HMGB1-202ENST00000339872 IQCB1Q15051 598 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 PRAMEF18Q5VWM3 479 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 USP17L6PQ6QN14 398 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 POTEDQ86YR6 584 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 KIFC2Q96AC6 838 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 PCDHA5Q9Y5H7 936 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 CTNND1O60716 968 aaKnown RBP15.18■□□□□ 0.02
HMGB1-202ENST00000339872 DDNO94850 711 aaPredicted RBP15.18■□□□□ 0.02
HMGB1-202ENST00000339872 CDC25AP30304 524 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 SAMD1Q6SPF0 538 aaPredicted RBP15.18■□□□□ 0.02
HMGB1-202ENST00000339872 CCDC34Q96HJ3 373 aa15.18■□□□□ 0.02
HMGB1-202ENST00000339872 GOLGA6L19H0YKK7 550 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 AP5Z1O43299 807 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 TDP2O95551 362 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 SLFN14P0C7P3 912 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 INPP5BP32019 993 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 HIRAP54198 1017 aaPredicted RBP15.17■□□□□ 0.02
HMGB1-202ENST00000339872 CHURC1Q8WUH1 139 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 BECN2A8MW95 431 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 AOPEPQ8N6M6 819 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 HOOK2Q96ED9 719 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 GINM1Q9NU53 330 aa15.17■□□□□ 0.02
HMGB1-202ENST00000339872 POLR2AP24928 1970 aaKnown RBP15.17■□□□□ 0.02
HMGB1-202ENST00000339872 SMCHD1A6NHR9 2005 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 PP2D1A8MPX8 630 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 SLC37A4O43826 429 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 EDIL3O43854 480 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 AFMP43652 599 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 CALCRLQ16602 461 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 CCDC174Q6PII3 467 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 FAM160B2Q86V87 743 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 DHX40Q8IX18 779 aaKnown RBP15.16■□□□□ 0.02
HMGB1-202ENST00000339872 IQUBQ8NA54 791 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 SMARCE1Q969G3 411 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 PYM1Q9BRP8 204 aaKnown RBP15.16■□□□□ 0.02
HMGB1-202ENST00000339872 FBXO28Q9NVF7 368 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 MEIS2O14770 477 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 LMOD1P29536 600 aaPredicted RBP15.16■□□□□ 0.02
HMGB1-202ENST00000339872 KARSQ15046 597 aaKnown RBP15.16■□□□□ 0.02
HMGB1-202ENST00000339872 E2F4Q16254 413 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 RASSF8Q8NHQ8 419 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 PAGE5Q96GU1 130 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 WRNIP1Q96S55 665 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 ANO3Q9BYT9 981 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 FEM1BQ9UK73 627 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 FZD1Q9UP38 647 aa15.16■□□□□ 0.02
HMGB1-202ENST00000339872 PLA2G6O60733 806 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 UBA7P41226 1012 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 RANBP17Q9H2T7 1088 aaKnown RBP15.15■□□□□ 0.02
HMGB1-202ENST00000339872 TECP42680 631 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 TXKP42681 527 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 AP3B2Q13367 1082 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 DGKZQ13574 1117 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 PPP4R3AQ6IN85 833 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 SH3RF1Q7Z6J0 888 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 AK8Q96MA6 479 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 BPIFA3Q9BQP9 254 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 KIAA1683Q9H0B3 1180 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 DISC1Q9NRI5 854 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 MAN1B1Q9UKM7 699 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 PPP2R3BQ9Y5P8 575 aa15.15■□□□□ 0.02
HMGB1-202ENST00000339872 OPLAHO14841 1288 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 WDR46O15213 610 aaKnown RBP15.14■□□□□ 0.01
HMGB1-202ENST00000339872 STAT6P42226 847 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 TRAF1Q13077 416 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 NT5DC1Q5TFE4 455 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 C9orf131Q5VYM1 1079 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 PDXDC2PQ6P474 469 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms