RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 AIFM3Q96NN9 605 aa25.58■■□□□ 1.69
SDC3-202ENST00000339394 MROH8Q9H579 483 aa25.58■■□□□ 1.69
SDC3-202ENST00000339394 RNF146Q9NTX7 359 aa25.58■■□□□ 1.69
SDC3-202ENST00000339394 BARHL2Q9NY43 387 aa25.58■■□□□ 1.69
SDC3-202ENST00000339394 ABCB11O95342 1321 aa25.57■■□□□ 1.68
SDC3-202ENST00000339394 COPB2P35606 906 aa25.57■■□□□ 1.68
SDC3-202ENST00000339394 NOM1Q5C9Z4 860 aaKnown RBP25.57■■□□□ 1.68
SDC3-202ENST00000339394 TYW1BQ6NUM6 668 aa25.57■■□□□ 1.68
SDC3-202ENST00000339394 CHST13Q8NET6 341 aa25.57■■□□□ 1.68
SDC3-202ENST00000339394 MRPL11Q9Y3B7 192 aaKnown RBP25.57■■□□□ 1.68
SDC3-202ENST00000339394 hCG_1984214I3L0E3 225 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 STXBP3O00186 592 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 ECM2O94769 699 aaPredicted RBP25.56■■□□□ 1.68
SDC3-202ENST00000339394 ANP32AP39687 249 aaKnown RBP25.56■■□□□ 1.68
SDC3-202ENST00000339394 LACTBP83111 547 aaPredicted RBP25.56■■□□□ 1.68
SDC3-202ENST00000339394 MUM1L1Q5H9M0 696 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 WDR78Q5VTH9 848 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 ZNF713Q8N859 430 aaPredicted RBP25.56■■□□□ 1.68
SDC3-202ENST00000339394 CLEC4DQ8WXI8 215 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 MAPK4P31152 587 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 WASF1Q92558 559 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 ACAD9Q9H845 621 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 FOXD4L1Q9NU39 408 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 SMC3Q9UQE7 1217 aa25.56■■□□□ 1.68
SDC3-202ENST00000339394 NFIBO00712 420 aa25.55■■□□□ 1.68
SDC3-202ENST00000339394 GJB2P29033 226 aa25.55■■□□□ 1.68
SDC3-202ENST00000339394 NAPAP54920 295 aa25.55■■□□□ 1.68
SDC3-202ENST00000339394 ZNF296Q8WUU4 475 aaPredicted RBP25.55■■□□□ 1.68
SDC3-202ENST00000339394 SHISA4Q96DD7 197 aa25.55■■□□□ 1.68
SDC3-202ENST00000339394 ALG1Q9BT22 464 aa25.55■■□□□ 1.68
SDC3-202ENST00000339394 VPS54Q9P1Q0 977 aa25.55■■□□□ 1.68
SDC3-202ENST00000339394 FBXO40Q9UH90 709 aa25.55■■□□□ 1.68
SDC3-202ENST00000339394 COL11A1P12107 1806 aaPredicted RBP25.55■■□□□ 1.68
SDC3-202ENST00000339394 OPLAHO14841 1288 aa25.54■■□□□ 1.68
SDC3-202ENST00000339394 CTGFP29279 349 aa25.54■■□□□ 1.68
SDC3-202ENST00000339394 GPR142Q7Z601 462 aa25.54■■□□□ 1.68
SDC3-202ENST00000339394 FAM184AQ8NB25 1140 aa25.54■■□□□ 1.68
SDC3-202ENST00000339394 ARHGAP39Q9C0H5 1083 aa25.54■■□□□ 1.68
SDC3-202ENST00000339394 FKTNO75072 461 aa25.53■■□□□ 1.68
SDC3-202ENST00000339394 HSP90AA1P07900 732 aaKnown RBP25.53■■□□□ 1.68
SDC3-202ENST00000339394 SH3GLB2Q9NR46 395 aa25.53■■□□□ 1.68
SDC3-202ENST00000339394 GJB4Q9NTQ9 266 aa25.53■■□□□ 1.68
SDC3-202ENST00000339394 HSPA1AP0DMV8 641 aaKnown RBP25.52■■□□□ 1.68
SDC3-202ENST00000339394 HSPA1BP0DMV9 641 aaKnown RBP25.52■■□□□ 1.68
SDC3-202ENST00000339394 PSMC4P43686 418 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 PPP1R18Q6NYC8 613 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 CWC22Q9HCG8 908 aaKnown RBP25.52■■□□□ 1.68
SDC3-202ENST00000339394 FOXN1O15353 648 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 CAP1Q01518 475 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.52■■□□□ 1.682e-6■■■■■ 31.5
SDC3-202ENST00000339394 PLEKHH3Q7Z736 793 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 ANKRD35Q8N283 1001 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 CCDC12Q8WUD4 166 aaPredicted RBP25.52■■□□□ 1.68
SDC3-202ENST00000339394 TBC1D5Q92609 795 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 TRIM47Q96LD4 638 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 PSTPIP2Q9H939 334 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 IVNS1ABPQ9Y6Y0 642 aa25.52■■□□□ 1.68
SDC3-202ENST00000339394 SMCO2A6NFE2 343 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 STRNO43815 780 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 FCER1AP12319 257 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 XBP1P17861 261 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 FCGRTP55899 365 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 KIF22Q14807 665 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 NSMFQ6X4W1 530 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 MCF2L2Q86YR7 1114 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 SPRYD3Q8NCJ5 442 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 RGS22Q8NE09 1264 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 CD99L2Q8TCZ2 262 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 ZMYND12Q9H0C1 365 aa25.51■■□□□ 1.67
SDC3-202ENST00000339394 A1CFQ9NQ94 594 aaKnown RBP25.51■■□□□ 1.67
SDC3-202ENST00000339394 TNPO2O14787 897 aaKnown RBP25.5■■□□□ 1.67
SDC3-202ENST00000339394 CFBP00751 764 aa25.5■■□□□ 1.67
SDC3-202ENST00000339394 KCTD2Q14681 263 aa25.5■■□□□ 1.67
SDC3-202ENST00000339394 CCDC148Q8NFR7 591 aa25.5■■□□□ 1.67
SDC3-202ENST00000339394 MMP19Q99542 508 aa25.5■■□□□ 1.67
SDC3-202ENST00000339394 KIF3AQ9Y496 699 aa25.5■■□□□ 1.67
SDC3-202ENST00000339394 PTPREP23469 700 aa25.49■■□□□ 1.67
SDC3-202ENST00000339394 ABRAQ8N0Z2 381 aa25.49■■□□□ 1.67
SDC3-202ENST00000339394 CYP39A1Q9NYL5 469 aa25.49■■□□□ 1.67
SDC3-202ENST00000339394 KCNJ14Q9UNX9 436 aa25.49■■□□□ 1.67
SDC3-202ENST00000339394 ESYT2A0FGR8 921 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 FOSBP53539 338 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 NLRP5P59047 1200 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 RPS6P62753 249 aaKnown RBP25.48■■□□□ 1.67
SDC3-202ENST00000339394 BAATQ14032 418 aaPredicted RBP25.48■■□□□ 1.67
SDC3-202ENST00000339394 GRB14Q14449 540 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 RNF207Q6ZRF8 634 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 FAM177A1Q8N128 213 aaPredicted RBP25.48■■□□□ 1.67
SDC3-202ENST00000339394 CUL5Q93034 780 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 ERO1AQ96HE7 468 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 C8orf76Q96K31 380 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 RIC8AQ9NPQ8 531 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 MEIS2O14770 477 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 HSPA8P11142 646 aaKnown RBP25.48■■□□□ 1.67
SDC3-202ENST00000339394 MRPL12P52815 198 aaKnown RBP25.48■■□□□ 1.67
SDC3-202ENST00000339394 GHRHRQ02643 423 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 USP17L6PQ6QN14 398 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 PHF20Q9BVI0 1012 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 C6orf50Q9HD87 102 aa25.48■■□□□ 1.67
SDC3-202ENST00000339394 SMCHD1A6NHR9 2005 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms