RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 ARHGAP39Q9C0H5 1083 aa13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 ACAD9Q9H845 621 aa13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 NCOA5Q9HCD5 579 aaKnown RBP13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 SH2B1Q9NRF2 756 aaPredicted RBP13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 HOMER2Q9NSB8 354 aa13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 RNF146Q9NTX7 359 aa13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 SLC5A4Q9NY91 659 aa13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 PCDHA1Q9Y5I3 950 aa13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 ABCB11O95342 1321 aa13.78□□□□□ -0.2
SPTLC1-202ENST00000337841 PRPF3O43395 683 aaKnown RBP13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 CTGFP29279 349 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 SSRP1Q08945 709 aaKnown RBP13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 FUT2Q10981 343 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 NID2Q14112 1375 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 PKN2Q16513 984 aaKnown RBP13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 ME3Q16798 604 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 USH1GQ495M9 461 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 DPP9Q86TI2 863 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 MCF2L2Q86YR7 1114 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 SOCS4Q8WXH5 440 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 MAF1Q9H063 256 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 SRRDQ9UH36 339 aa13.77□□□□□ -0.21
SPTLC1-202ENST00000337841 RGS2P41220 211 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 SCRN1Q12765 414 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 NTRK3Q16288 839 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 OTOP1Q7RTM1 612 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 NECAB1Q8N987 351 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 RGS22Q8NE09 1264 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 RAET1EQ8TD07 263 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 SLC26A6Q9BXS9 759 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 RNF26Q9BY78 433 aaPredicted RBP13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 GJD2Q9UKL4 321 aa13.76□□□□□ -0.21
SPTLC1-202ENST00000337841 hCG_1642624A0A1W2PR95 340 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 FLT3LGP49771 235 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 MAP2K5Q13163 448 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 GRB14Q14449 540 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 MUM1L1Q5H9M0 696 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 MORN1Q5T089 497 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 NSMFQ6X4W1 530 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 SAMD3Q8N6K7 520 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 PHKBQ93100 1093 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 GTF3C6Q969F1 213 aa13.75□□□□□ -0.21
SPTLC1-202ENST00000337841 PFASO15067 1338 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 CNTNAP5Q8WYK1 1306 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 POTEB2H3BUK9 544 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 hCG_1984214I3L0E3 225 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 PPP1R11O60927 126 aaPredicted RBP13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 XRCC5P13010 732 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 CYP2B6P20813 491 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 ADORA2AP29274 412 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 PRKCZQ05513 592 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 IRF5Q13568 498 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 PFKFB3Q16875 520 aaPredicted RBP13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 RNF207Q6ZRF8 634 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 HEATR3Q7Z4Q2 680 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 TRMT44Q8IYL2 757 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 ZNF713Q8N859 430 aaPredicted RBP13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 CLEC4DQ8WXI8 215 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 MAP3K20Q9NYL2 800 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 GABRQQ9UN88 632 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 PTPN22Q9Y2R2 807 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 CEP350Q5VT06 3117 aa13.74□□□□□ -0.21
SPTLC1-202ENST00000337841 PTPDC1A2A3K4 754 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 DEXIO95424 95 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 LARGE1O95461 756 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 SCG2P13521 617 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 CAP1Q01518 475 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 BAATQ14032 418 aaPredicted RBP13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 FBXO46Q6PJ61 603 aaPredicted RBP13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 CCDC83Q8IWF9 413 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 CCDC12Q8WUD4 166 aaPredicted RBP13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 WASF1Q92558 559 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 USP6NLQ92738 828 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 CUL5Q93034 780 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 TMX3Q96JJ7 454 aa13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 LLPHQ9BRT6 129 aaKnown RBP13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 A1CFQ9NQ94 594 aaKnown RBP13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 DIS3Q9Y2L1 958 aaKnown RBP13.73□□□□□ -0.21
SPTLC1-202ENST00000337841 GCOM1H8Y6P7 765 aaPredicted RBP13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 NFIBO00712 420 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 ADCY3O60266 1144 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 COBLO75128 1261 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 CFBP00751 764 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 PGK2P07205 417 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 HOXC6P09630 235 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 POLR2MP0CAP2 368 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 CALML3P27482 149 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 MRPL12P52815 198 aaKnown RBP13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 NAPAP54920 295 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 TEX2Q8IWB9 1127 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 GLT8D2Q9H1C3 349 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 PSTPIP2Q9H939 334 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 BARHL2Q9NY43 387 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 CYP39A1Q9NYL5 469 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 ORC3Q9UBD5 711 aaPredicted RBP13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 ADD3Q9UEY8 706 aaKnown RBP13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 RLFQ13129 1914 aa13.72□□□□□ -0.21
SPTLC1-202ENST00000337841 DNAJC25-GNG10A0A024R161 153 aa13.71□□□□□ -0.21
SPTLC1-202ENST00000337841 B4DLN1 442 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms