RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 AGBL1Q96MI9 1066 aa19.03■□□□□ 0.64
PDLIM1-201ENST00000329399 LY9Q9HBG7 655 aa19.03■□□□□ 0.64
PDLIM1-201ENST00000329399 XRCC5P13010 732 aaKnown RBP19.02■□□□□ 0.63
PDLIM1-201ENST00000329399 CCDC96Q2M329 555 aa19.02■□□□□ 0.63
PDLIM1-201ENST00000329399 SNRNP48Q6IEG0 339 aaKnown RBP19.02■□□□□ 0.63
PDLIM1-201ENST00000329399 NFXL1Q6ZNB6 911 aa19.02■□□□□ 0.63
PDLIM1-201ENST00000329399 PNMA1Q8ND90 353 aa19.02■□□□□ 0.63
PDLIM1-201ENST00000329399 SOCS4Q8WXH5 440 aa19.02■□□□□ 0.63
PDLIM1-201ENST00000329399 SLC12A7Q9Y666 1083 aa19.02■□□□□ 0.63
PDLIM1-201ENST00000329399 GOLGA8BA8MQT2 603 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 CPLX1O14810 134 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 ZBTB43O43298 467 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 PLA2G6O60733 806 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 ZBED4O75132 1171 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 IGHA2P01877 340 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 PGK2P07205 417 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 CALM1P0DP23 149 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 CALM2P0DP24 149 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 CALM3P0DP25 149 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 RGS2P41220 211 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 ZNF543Q08ER8 600 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 IKQ13123 557 aaPredicted RBP19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 CSPP1Q1MSJ5 1256 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 APOA5Q6Q788 366 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 BTNL9Q6UXG8 535 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 NSUN7Q8NE18 718 aaKnown RBP19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 CHURC1Q8WUH1 139 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 RNF208Q9H0X6 261 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 MROH8Q9H579 483 aa19.01■□□□□ 0.63
PDLIM1-201ENST00000329399 ATP2A1O14983 1001 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 SLC25A27O95847 323 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 HOXC6P09630 235 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 METAP2P50579 478 aaKnown RBP eCLIP19■□□□□ 0.636e-8■□□□□ 10.7
PDLIM1-201ENST00000329399 CCDC174Q6PII3 467 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 FAM160B2Q86V87 743 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 SHISA4Q96DD7 197 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 TEX13BQ9BXU2 312 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 UBA5Q9GZZ9 404 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 BRPF3Q9ULD4 1205 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 IVNS1ABPQ9Y6Y0 642 aa19■□□□□ 0.63
PDLIM1-201ENST00000329399 STRNO43815 780 aa18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 F13A1P00488 732 aa18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 HMGCRP04035 888 aa18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 CACNB2Q08289 660 aaPredicted RBP18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 PKP1Q13835 747 aa18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 MAP3K21Q5TCX8 1036 aa18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 APBA2Q99767 749 aa18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 ZSCAN16Q9H4T2 348 aaPredicted RBP18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 NAP1L2Q9ULW6 460 aaPredicted RBP18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 ZNFX1Q9P2E3 1918 aaKnown RBP18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 PDE4DIPQ5VU43 2346 aa18.99■□□□□ 0.63
PDLIM1-201ENST00000329399 CYP2C19P33261 490 aa18.98■□□□□ 0.63
PDLIM1-201ENST00000329399 SLC35G1Q2M3R5 365 aa18.98■□□□□ 0.63
PDLIM1-201ENST00000329399 SYDE2Q5VT97 1194 aa18.98■□□□□ 0.63
PDLIM1-201ENST00000329399 STAG2Q8N3U4 1231 aa18.98■□□□□ 0.63
PDLIM1-201ENST00000329399 TMEM106CQ9BVX2 250 aa18.98■□□□□ 0.63
PDLIM1-201ENST00000329399 KAT14Q9H8E8 782 aa18.98■□□□□ 0.63
PDLIM1-201ENST00000329399 HOMER2Q9NSB8 354 aa18.98■□□□□ 0.63
PDLIM1-201ENST00000329399 MTMR6Q9Y217 621 aa18.98■□□□□ 0.63
PDLIM1-201ENST00000329399 PTPDC1A2A3K4 754 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 FCER1AP12319 257 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 PRKAR2AP13861 404 aaKnown RBP18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 CCND3P30281 292 aaPredicted RBP18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 UBXN2AP68543 259 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 IFIT1BQ5T764 474 aaKnown RBP18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 DPP9Q86TI2 863 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 TRPV1Q8NER1 839 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 WASF1Q92558 559 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 MMP19Q99542 508 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 GJB1P08034 283 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 CCT2P78371 535 aaKnown RBP18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 MUM1L1Q5H9M0 696 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 PRAMEF19Q5SWL8 479 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 ABRAQ8N0Z2 381 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 MAP3K14Q99558 947 aa18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 RANBP17Q9H2T7 1088 aaKnown RBP18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 PAK6Q9NQU5 681 aaPredicted RBP18.97■□□□□ 0.63
PDLIM1-201ENST00000329399 H3BQV1 296 aa18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 DDAH1O94760 285 aa18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 CTDNEP1O95476 244 aa18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 ZNF792Q3KQV3 632 aa18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 ATL3Q6DD88 541 aa18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 CATIPQ7Z7H3 387 aa18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 DEFB118Q96PH6 123 aa18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 STK36Q9NRP7 1315 aa18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 RBM28Q9NW13 759 aaKnown RBP18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 CTDP1Q9Y5B0 961 aaPredicted RBP18.96■□□□□ 0.63
PDLIM1-201ENST00000329399 DNAJC25-GNG10A0A024R161 153 aa18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 GOLGA8AA7E2F4 631 aa18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 GJA8P48165 433 aa18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 OAZ1P54368 228 aa18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 U2AF1L4Q8WU68 220 aaKnown RBP18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 MAML3Q96JK9 1138 aa18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 FGD4Q96M96 766 aa18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.95■□□□□ 0.627e-7■■□□□ 14.1
PDLIM1-201ENST00000329399 MAD2L2Q9UI95 211 aa18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 DDX49Q9Y6V7 483 aaKnown RBP18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 BAZ2BQ9UIF8 2168 aaKnown RBP18.95■□□□□ 0.62
PDLIM1-201ENST00000329399 RPTORQ8N122 1335 aa18.94■□□□□ 0.62
PDLIM1-201ENST00000329399 VPS37CA5D8V6 355 aaPredicted RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms