RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PSMD1Q99460 953 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 MAK16Q9BXY0 300 aaKnown RBP12.63□□□□□ -0.39
VPS39-201ENST00000318006 SSX2IPQ9Y2D8 614 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 BTBD18B2RXH4 712 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 ZNF827Q17R98 1081 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 HERC4Q5GLZ8 1057 aaPredicted RBP12.63□□□□□ -0.39
VPS39-201ENST00000318006 AGTPBP1Q9UPW5 1226 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 CAMSAP1Q5T5Y3 1602 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 BAG2O95816 211 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 CASP14P31944 242 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 DIXDC1Q155Q3 683 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 LRRC23Q53EV4 343 aaPredicted RBP12.63□□□□□ -0.39
VPS39-201ENST00000318006 LIN9Q5TKA1 542 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 NCAPH2Q6IBW4 605 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 BLIDQ8IZY5 108 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 PI4K2BQ8TCG2 481 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 ABCB6Q9NP58 842 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 RTEL1Q9NZ71 1219 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 NCAPD2Q15021 1401 aa12.63□□□□□ -0.39
VPS39-201ENST00000318006 IRX5P78411 483 aaPredicted RBP12.62□□□□□ -0.39
VPS39-201ENST00000318006 ZYXQ15942 572 aaKnown RBP12.62□□□□□ -0.39
VPS39-201ENST00000318006 DPCR1Q3MIW9 517 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 RILPQ96NA2 401 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 DPH5Q9H2P9 285 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 PPP1R9AQ9ULJ8 1098 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 ZNF804BA4D1E1 1349 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 MIER3Q7Z3K6 550 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 CFAP61Q8NHU2 1237 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 KLHL29Q96CT2 875 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 SUDS3Q9H7L9 328 aaPredicted RBP12.62□□□□□ -0.39
VPS39-201ENST00000318006 ERVV-1B6SEH8 477 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 SEMA3EO15041 775 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 PDE6BP35913 854 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 ITIH3Q06033 890 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 DYMQ7RTS9 669 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 TSPYL2Q9H2G4 693 aaPredicted RBP12.62□□□□□ -0.39
VPS39-201ENST00000318006 GJA3Q9Y6H8 435 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 PNPLA6Q8IY17 1366 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 ARHGAP42A6NI28 874 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 ENC1O14682 589 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 BUB1O43683 1085 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 DDAH1O94760 285 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 TBC1D8O95759 1140 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 APBA3O96018 575 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 SCG2P13521 617 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 ALS2CLQ60I27 953 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 HIBCHQ6NVY1 386 aaPredicted RBP12.62□□□□□ -0.39
VPS39-201ENST00000318006 CCDC13Q8IYE1 715 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 VPS37BQ9H9H4 285 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 PICK1Q9NRD5 415 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 ATP8A2Q9NTI2 1148 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 DNM3Q9UQ16 869 aa12.62□□□□□ -0.39
VPS39-201ENST00000318006 M0R2C6 588 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 KRT5P13647 590 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 ERCC3P19447 782 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 ADD2P35612 726 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 NNTQ13423 1086 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 TAF11Q15544 211 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 KMT5BQ4FZB7 885 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 RIMBP3CA6NJZ7 1639 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 RIMBP3BA6NNM3 1639 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 RIMBP3Q9UFD9 1639 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 ARHGEF35A5YM69 484 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 CYP27B1O15528 508 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 APOA5Q6Q788 366 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 NSUN7Q8NE18 718 aaKnown RBP12.61□□□□□ -0.39
VPS39-201ENST00000318006 PIGBQ92521 554 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 HINFPQ9BQA5 517 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 PCDHA5Q9Y5H7 936 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 KIF1CO43896 1103 aaKnown RBP12.61□□□□□ -0.39
VPS39-201ENST00000318006 ZMYND10O75800 440 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 ZWINTO95229 277 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 GNA14O95837 355 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 SLMAPQ14BN4 828 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 USH1GQ495M9 461 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 CC2D1AQ6P1N0 951 aaPredicted RBP12.61□□□□□ -0.39
VPS39-201ENST00000318006 PPP1R21Q6ZMI0 780 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 TMEM87AQ8NBN3 555 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 TRIM6Q9C030 488 aaPredicted RBP12.61□□□□□ -0.39
VPS39-201ENST00000318006 SEC31BQ9NQW1 1179 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 SCOCQ9UIL1 159 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 CLEC11AQ9Y240 323 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 ADGRL3Q9HAR2 1447 aa12.61□□□□□ -0.39
VPS39-201ENST00000318006 KLRF2D3W0D1 207 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 H7C1W4 665 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 COPB1P53618 953 aaKnown RBP12.6□□□□□ -0.39
VPS39-201ENST00000318006 SMTNP53814 917 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 DBN1Q16643 649 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 CCHCR1Q8TD31 782 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 FAM212AQ96EL1 285 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 CDC42BPGQ6DT37 1551 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 GYS2P54840 703 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 DLGAP5Q15398 846 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 THEGQ9P2T0 379 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 BIN2Q9UBW5 565 aaPredicted RBP12.6□□□□□ -0.39
VPS39-201ENST00000318006 ATP10DQ9P241 1426 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 HEXIM1O94992 359 aaKnown RBP12.6□□□□□ -0.39
VPS39-201ENST00000318006 BTDP43251 543 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 GOLGA8FQ08AF8 430 aa12.6□□□□□ -0.39
VPS39-201ENST00000318006 GOLGA8DPQ0D2H9 430 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms