RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SERPINB6P35237 376 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 DBN1Q16643 649 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 GALNT17Q6IS24 598 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 CAPN12Q6ZSI9 719 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 ATP8A2Q9NTI2 1148 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 PTPN21Q16825 1174 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 MMS22LQ6ZRQ5 1243 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 UNC5CLQ8IV45 518 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 GUCY2CP25092 1073 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 ADAM9Q13443 819 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 FNBP4Q8N3X1 1017 aaPredicted RBP18.97■□□□□ 0.63
SYNPO-201ENST00000307662 LINC00301Q8NCQ3 95 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 PANX2Q96RD6 677 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 MAN1B1Q9UKM7 699 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 DIXDC1Q155Q3 683 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 SLFNL1Q499Z3 407 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 IWS1Q96ST2 819 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 A0A087WWV3 80 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 NR1D1P20393 614 aa18.97■□□□□ 0.63
SYNPO-201ENST00000307662 FOXP1Q9H334 677 aaPredicted RBP18.97■□□□□ 0.63
SYNPO-201ENST00000307662 SLC12A2P55011 1212 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 NEK8Q86SG6 692 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 CDAN1Q8IWY9 1227 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 ENOX1Q8TC92 643 aaKnown RBP18.96■□□□□ 0.63
SYNPO-201ENST00000307662 TNKSO95271 1327 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 KDM5CP41229 1560 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 TPH2Q8IWU9 490 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 DAAM1Q9Y4D1 1078 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 DHTKD1Q96HY7 919 aaPredicted RBP18.96■□□□□ 0.63
SYNPO-201ENST00000307662 TAF11Q15544 211 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 ICE2Q659A1 982 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 ERVK-7P63135 1459 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 PDE6CP51160 858 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 FAM133BQ5BKY9 247 aaKnown RBP18.96■□□□□ 0.63
SYNPO-201ENST00000307662 HVCN1Q96D96 273 aa18.96■□□□□ 0.63
SYNPO-201ENST00000307662 AATKQ6ZMQ8 1374 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.95■□□□□ 0.62
SYNPO-201ENST00000307662 PGRMC1O00264 195 aaKnown RBP18.95■□□□□ 0.62
SYNPO-201ENST00000307662 COBLO75128 1261 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 CCDC93Q567U6 631 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 FAM26FQ5R3K3 315 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 TMCO4Q5TGY1 634 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 WHAMMQ8TF30 809 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 CUEDC2Q9H467 287 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 DDAH1O94760 285 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 TNNI1P19237 187 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 SARM1Q6SZW1 724 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 TADA2BQ86TJ2 420 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 ATP8A1Q9Y2Q0 1164 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 ARHGAP4P98171 946 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 MAGOHBQ96A72 148 aaKnown RBP18.95■□□□□ 0.62
SYNPO-201ENST00000307662 TXLNGQ9NUQ3 528 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 SCOCQ9UIL1 159 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 ADAM21Q9UKJ8 722 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 UFL1O94874 794 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 EXOC3L4Q17RC7 722 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 USH1GQ495M9 461 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 NXNQ6DKJ4 435 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 SCYL3Q8IZE3 742 aa18.95■□□□□ 0.62
SYNPO-201ENST00000307662 SART1O43290 800 aaKnown RBP18.94■□□□□ 0.62
SYNPO-201ENST00000307662 ATF7P17544 494 aaPredicted RBP18.94■□□□□ 0.62
SYNPO-201ENST00000307662 LMNB1P20700 586 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 ARHGEF18Q6ZSZ5 1173 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 RBM17Q96I25 401 aaKnown RBP18.94■□□□□ 0.62
SYNPO-201ENST00000307662 ZNF521Q96K83 1311 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 UBAP1LF5GYI3 381 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 GNPATO15228 680 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 STMN1P16949 149 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 YWHAEP62258 255 aaKnown RBP18.94■□□□□ 0.62
SYNPO-201ENST00000307662 HADHQ16836 314 aaKnown RBP18.94■□□□□ 0.62
SYNPO-201ENST00000307662 FBXO41Q8TF61 875 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 PCDHA12Q9UN75 941 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 SYNMO15061 1565 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 SATB1Q01826 763 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 ZKSCAN8Q15776 578 aaPredicted RBP18.94■□□□□ 0.62
SYNPO-201ENST00000307662 TRAPPC3LQ5T215 181 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 BSPRYQ5W0U4 402 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 HIBCHQ6NVY1 386 aaPredicted RBP18.94■□□□□ 0.62
SYNPO-201ENST00000307662 DNAJC10Q8IXB1 793 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 FTOQ9C0B1 505 aaKnown RBP eCLIP18.94■□□□□ 0.62
SYNPO-201ENST00000307662 PTPN22Q9Y2R2 807 aa18.94■□□□□ 0.62
SYNPO-201ENST00000307662 HMGB1P1B2RPK0 211 aaPredicted RBP18.93■□□□□ 0.62
SYNPO-201ENST00000307662 PDE6AP16499 860 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 KIF23Q02241 960 aaPredicted RBP18.93■□□□□ 0.62
SYNPO-201ENST00000307662 DHX9Q08211 1270 aaKnown RBP18.93■□□□□ 0.62
SYNPO-201ENST00000307662 PPP2R5AQ15172 486 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 ZNF658Q5TYW1 1059 aaPredicted RBP18.93■□□□□ 0.62
SYNPO-201ENST00000307662 MAPKAPK5Q8IW41 473 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 ANKRD35Q8N283 1001 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 MYCLP12524 364 aaPredicted RBP18.93■□□□□ 0.62
SYNPO-201ENST00000307662 CCDC125Q86Z20 511 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 KSR1Q8IVT5 923 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 P2RX5Q93086 422 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 ERVV-2B6SEH9 535 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 POC1B-GALNT4F8VUJ3 575 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 HSPA2P54652 639 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 PPP2R5CQ13362 524 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 RPS6KA2Q15349 733 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 USP17L12C9JPN9 530 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 USP17L21D6R901 530 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms