RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 IFIH1Q9BYX4 1025 aaKnown RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 ZNF521Q96K83 1311 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 ANO1Q5XXA6 986 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 TNIP2Q8NFZ5 429 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 ZSWIM6Q9HCJ5 1215 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 SRRM3A6NNA2 597 aaPredicted RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 TFIP11Q9UBB9 837 aaKnown RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 ESRRGP62508 458 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 DCAF15Q66K64 600 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 INTS8Q75QN2 995 aaKnown RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 ZC3H12CQ9C0D7 883 aaKnown RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 MMADHCQ9H3L0 296 aaPredicted RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 TEKT2Q9UIF3 430 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 HIP1RO75146 1068 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 IFNA8P32881 189 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 IL6STP40189 918 aaPredicted RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 NUF2Q9BZD4 464 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 METP08581 1390 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 BRD1O95696 1058 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 NOP2P46087 812 aaKnown RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 LRRC8AQ8IWT6 810 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 DACT1Q9NYF0 836 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 NFU1Q9UMS0 254 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 STX8Q9UNK0 236 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 COL4A3BPQ9Y5P4 624 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 LDHBP07195 334 aaKnown RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 TBXAS1P24557 533 aaPredicted RBP4.4□□□□□ -1.71
USH2A-201ENST00000307340 ZNF365Q70YC5 407 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 MIGA2Q7L4E1 593 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 C17orf75Q9HAS0 396 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 MPP6Q9NZW5 540 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 CFAP73A6NFT4 308 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 PSMD7P51665 324 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 PPP1R7Q15435 360 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 POLKQ9UBT6 870 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 TYW5A2RUC4 315 aaKnown RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 CUL4AQ13619 759 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ZKSCAN8Q15776 578 aaPredicted RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 CCDC122Q5T0U0 273 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 XRRA1Q6P2D8 792 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 VPS52Q8N1B4 723 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 FBXO18Q8NFZ0 1043 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.39□□□□□ -1.71
USH2A-201ENST00000307340 ADCY2Q08462 1091 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ADD3Q9UEY8 706 aaKnown RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 ATXN2Q99700 1313 aaKnown RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 LMAN1P49257 510 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 NLRP12P59046 1061 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 RBSNQ9H1K0 784 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ZRANB1Q9UGI0 708 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 MYBL1P10243 752 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 CA4P22748 312 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 UBE4AQ14139 1066 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 EHD2Q9NZN4 543 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 NFAT5O94916 1531 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 MATR3P43243 847 aaKnown RBP eCLIP4.39□□□□□ -1.71
USH2A-201ENST00000307340 IRX1P78414 480 aaPredicted RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 ABCF2Q9UG63 623 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 AMFRQ9UKV5 643 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 EXOC6BQ9Y2D4 811 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 RBM8AQ9Y5S9 174 aaKnown RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 CCDC78A2IDD5 438 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 PAMP19021 973 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 PALB2Q86YC2 1186 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ZSCAN29Q8IWY8 852 aaPredicted RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 ATP6V0A1Q93050 837 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 MCUR1Q96AQ8 359 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 MYH1P12882 1939 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 MYH4Q9Y623 1939 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 EYA2O00167 538 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 SLC4A3P48751 1232 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 C6orf118Q5T5N4 469 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 CCDC186Q7Z3E2 898 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 NOSTRINQ8IVI9 506 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 PSD3Q9NYI0 1048 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ADCY9O60503 1353 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 GUCY1B3Q02153 619 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 RINT1Q6NUQ1 792 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 CCDC25Q86WR0 208 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 MFN1Q8IWA4 741 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 TRPC7Q9HCX4 862 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ORC6Q9Y5N6 252 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ALKQ9UM73 1620 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 USP42Q9H9J4 1324 aaKnown RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 M0R3G1 203 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 SKIP12755 728 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 HADHAP40939 763 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 OLFML2BQ68BL8 750 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 GSTA5Q7RTV2 222 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 GCOM2Q9BZD3 368 aaPredicted RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 SCINQ9Y6U3 715 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 FAM13AO94988 1023 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 INPP5BP32019 993 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ZNF135P52742 658 aaPredicted RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 ATG16L1Q676U5 607 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 RIN3Q8TB24 985 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 SYN2Q92777 582 aaPredicted RBP4.39□□□□□ -1.71
USH2A-201ENST00000307340 SLC52A2Q9HAB3 445 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 RWDD2AQ9UIY3 292 aa4.39□□□□□ -1.71
USH2A-201ENST00000307340 ZBTB38Q8NAP3 1195 aaPredicted RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms