RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 PCDHA5Q9Y5H7 936 aa23.84■■□□□ 1.41
YBX3-202ENST00000279550 VWA3AA6NCI4 1184 aa23.84■■□□□ 1.41
YBX3-202ENST00000279550 SLC1A4P43007 532 aa23.84■■□□□ 1.41
YBX3-202ENST00000279550 TTBK2Q6IQ55 1244 aa23.84■■□□□ 1.41
YBX3-202ENST00000279550 CCDC84Q86UT8 332 aaPredicted RBP23.84■■□□□ 1.41
YBX3-202ENST00000279550 SCYL3Q8IZE3 742 aa23.84■■□□□ 1.41
YBX3-202ENST00000279550 ZKSCAN4Q969J2 545 aaPredicted RBP23.84■■□□□ 1.41
YBX3-202ENST00000279550 ZNF830Q96NB3 372 aaPredicted RBP23.84■■□□□ 1.41
YBX3-202ENST00000279550 BPIFA3Q9BQP9 254 aa23.84■■□□□ 1.41
YBX3-202ENST00000279550 TRIM5Q9C035 493 aa23.84■■□□□ 1.41
YBX3-202ENST00000279550 NAT10Q9H0A0 1025 aaKnown RBP23.84■■□□□ 1.41
YBX3-202ENST00000279550 RRAGCQ9HB90 399 aa23.84■■□□□ 1.41
YBX3-202ENST00000279550 SEC63Q9UGP8 760 aaKnown RBP23.84■■□□□ 1.41
YBX3-202ENST00000279550 BECN2A8MW95 431 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 NDUFB10O96000 172 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 POTEIP0CG38 1075 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 POTEJP0CG39 1038 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 INF2Q27J81 1249 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 CCDC96Q2M329 555 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 SARM1Q6SZW1 724 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 KCTD1Q719H9 257 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 GMCL1Q96IK5 515 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 GLIS2Q9BZE0 524 aaPredicted RBP23.83■■□□□ 1.41
YBX3-202ENST00000279550 SH2D4AQ9H788 454 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 GOPCQ9HD26 462 aa23.83■■□□□ 1.41
YBX3-202ENST00000279550 SMCO2A6NFE2 343 aa23.82■■□□□ 1.4
YBX3-202ENST00000279550 USP2O75604 605 aaPredicted RBP23.82■■□□□ 1.4
YBX3-202ENST00000279550 MSNP26038 577 aaKnown RBP23.82■■□□□ 1.4
YBX3-202ENST00000279550 PRKG1Q13976 671 aa23.82■■□□□ 1.4
YBX3-202ENST00000279550 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.82■■□□□ 1.4
YBX3-202ENST00000279550 CDCA5Q96FF9 252 aa23.82■■□□□ 1.4
YBX3-202ENST00000279550 CLEC11AQ9Y240 323 aa23.82■■□□□ 1.4
YBX3-202ENST00000279550 PPP1R12BO60237 982 aaPredicted RBP23.81■■□□□ 1.4
YBX3-202ENST00000279550 POSTNQ15063 836 aa23.81■■□□□ 1.4
YBX3-202ENST00000279550 CCDC12Q8WUD4 166 aaPredicted RBP23.81■■□□□ 1.4
YBX3-202ENST00000279550 DHX58Q96C10 678 aa23.81■■□□□ 1.4
YBX3-202ENST00000279550 JMJD4Q9H9V9 463 aa23.81■■□□□ 1.4
YBX3-202ENST00000279550 DOCK1Q14185 1865 aa23.81■■□□□ 1.4
YBX3-202ENST00000279550 COA7Q96BR5 231 aa23.81■■□□□ 1.4
YBX3-202ENST00000279550 TTC12Q9H892 705 aaPredicted RBP23.81■■□□□ 1.4
YBX3-202ENST00000279550 C6orf50Q9HD87 102 aa23.81■■□□□ 1.4
YBX3-202ENST00000279550 PICK1Q9NRD5 415 aa23.81■■□□□ 1.4
YBX3-202ENST00000279550 BMP6P22004 513 aa23.8■■□□□ 1.4
YBX3-202ENST00000279550 NF2P35240 595 aa23.8■■□□□ 1.4
YBX3-202ENST00000279550 SLC16A2P36021 539 aa23.8■■□□□ 1.4
YBX3-202ENST00000279550 NOL9Q5SY16 702 aaKnown RBP23.8■■□□□ 1.4
YBX3-202ENST00000279550 ADGRF4Q8IZF3 695 aa23.8■■□□□ 1.4
YBX3-202ENST00000279550 SPICE1Q8N0Z3 855 aa23.8■■□□□ 1.4
YBX3-202ENST00000279550 TMEM60Q9H2L4 133 aa23.8■■□□□ 1.4
YBX3-202ENST00000279550 VCPKMTQ9H867 229 aa23.8■■□□□ 1.4
YBX3-202ENST00000279550 MAN1B1Q9UKM7 699 aa23.8■■□□□ 1.4
YBX3-202ENST00000279550 PPP1R11O60927 126 aaPredicted RBP23.79■■□□□ 1.4
YBX3-202ENST00000279550 PTPRAP18433 802 aa23.79■■□□□ 1.4
YBX3-202ENST00000279550 NCAPHQ15003 741 aa23.79■■□□□ 1.4
YBX3-202ENST00000279550 KIAA1755Q5JYT7 1200 aa23.79■■□□□ 1.4
YBX3-202ENST00000279550 KRT25Q7Z3Z0 450 aa23.79■■□□□ 1.4
YBX3-202ENST00000279550 NUP88Q99567 741 aaPredicted RBP23.79■■□□□ 1.4
YBX3-202ENST00000279550 FEZ1Q99689 392 aa23.79■■□□□ 1.4
YBX3-202ENST00000279550 TMEM260Q9NX78 707 aa23.79■■□□□ 1.4
YBX3-202ENST00000279550 ESYT2A0FGR8 921 aa23.79■■□□□ 1.4
YBX3-202ENST00000279550 ZYXQ15942 572 aaKnown RBP23.79■■□□□ 1.4
YBX3-202ENST00000279550 BMP3P12645 472 aa23.78■■□□□ 1.4
YBX3-202ENST00000279550 SARSP49591 514 aaKnown RBP23.78■■□□□ 1.4
YBX3-202ENST00000279550 MAP1SQ66K74 1059 aaPredicted RBP23.78■■□□□ 1.4
YBX3-202ENST00000279550 SH3RF1Q7Z6J0 888 aa23.78■■□□□ 1.4
YBX3-202ENST00000279550 KIAA1683Q9H0B3 1180 aa23.78■■□□□ 1.4
YBX3-202ENST00000279550 HOOK1Q9UJC3 728 aaKnown RBP23.78■■□□□ 1.4
YBX3-202ENST00000279550 USP17L10C9JJH3 530 aa23.77■■□□□ 1.4
YBX3-202ENST00000279550 hCG_1984214I3L0E3 225 aa23.77■■□□□ 1.4
YBX3-202ENST00000279550 SLFN14P0C7P3 912 aa23.77■■□□□ 1.4
YBX3-202ENST00000279550 GNA11P29992 359 aa23.77■■□□□ 1.4
YBX3-202ENST00000279550 NONOQ15233 471 aaKnown RBP eCLIP23.77■■□□□ 1.4
YBX3-202ENST00000279550 NT5DC1Q5TFE4 455 aa23.77■■□□□ 1.4
YBX3-202ENST00000279550 ARL6IP4Q66PJ3 421 aaKnown RBP23.77■■□□□ 1.4
YBX3-202ENST00000279550 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.77■■□□□ 1.4
YBX3-202ENST00000279550 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.77■■□□□ 1.4
YBX3-202ENST00000279550 ZNF713Q8N859 430 aaPredicted RBP23.77■■□□□ 1.4
YBX3-202ENST00000279550 KCNF1Q9H3M0 494 aa23.77■■□□□ 1.4
YBX3-202ENST00000279550 NMRK2Q9NPI5 230 aa23.77■■□□□ 1.4
YBX3-202ENST00000279550 BIN2Q9UBW5 565 aaPredicted RBP23.77■■□□□ 1.4
YBX3-202ENST00000279550 PNMA6FA0A0J9YX94 578 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 ZNF500O60304 480 aaPredicted RBP23.76■■□□□ 1.39
YBX3-202ENST00000279550 CDC25BP30305 580 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 IREB2P48200 963 aaKnown RBP23.76■■□□□ 1.39
YBX3-202ENST00000279550 MAP3K9P80192 1104 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 VGLL4Q14135 290 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 JAKMIP3Q5VZ66 844 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 KANK3Q6NY19 840 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 ZNF526Q8TF50 670 aaPredicted RBP23.76■■□□□ 1.39
YBX3-202ENST00000279550 PAGE5Q96GU1 130 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 WDR18Q9BV38 432 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 AS3MTQ9HBK9 375 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 NRBP1Q9UHY1 535 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 E2F4Q16254 413 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 LDHDQ86WU2 507 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 SMARCE1Q969G3 411 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 MTMR8Q96EF0 704 aa23.76■■□□□ 1.39
YBX3-202ENST00000279550 TMEM232C9JQI7 657 aa23.75■■□□□ 1.39
YBX3-202ENST00000279550 PTGS1P23219 599 aa23.75■■□□□ 1.39
YBX3-202ENST00000279550 CASP1P29466 404 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms