RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 ATXN3P54252 364 aaPredicted RBP8.64□□□□□ -1.03
USP3-201ENST00000268049 ATP11AP98196 1134 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 USP50Q70EL3 339 aaPredicted RBP8.64□□□□□ -1.03
USP3-201ENST00000268049 THEM5Q8N1Q8 247 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 CEP120Q8N960 986 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 APPBP2Q92624 585 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 TBC1D32Q96NH3 1257 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 GDPD2Q9HCC8 539 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 JADE2Q9NQC1 790 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 SERPINA10Q9UK55 444 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 KLF18A0A0U1RQI7 1052 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 IGFBP4P22692 258 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 NDUFAF2Q8N183 169 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 NRKQ7Z2Y5 1582 aa8.64□□□□□ -1.03
USP3-201ENST00000268049 ZNF233A6NK53 670 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 GOLGA8CPA6NN73 597 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 C19orf81C9J6K1 198 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 PFDN6O15212 129 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 PEX19P40855 299 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 TBC1D9Q6ZT07 1266 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 CEP128Q6ZU80 1094 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 COL23A1Q86Y22 540 aaPredicted RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 CCDC144CPQ8IYA2 1237 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 TNS2Q63HR2 1409 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 DDX39AO00148 427 aaKnown RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 NNMTP40261 264 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 PPP1R2P41236 205 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 GCLCP48506 637 aaPredicted RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 FHDC1Q9C0D6 1143 aaPredicted RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 USP17L10C9JJH3 530 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 TMEM232C9JQI7 657 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 NDUFAB1O14561 156 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 PCP11498 1178 aaKnown RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 SH3BGRP55822 239 aaPredicted RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 CACNA2D3Q8IZS8 1091 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 PCSK9Q8NBP7 692 aaKnown RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 RAB3IL1Q8TBN0 382 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 NLRP7Q8WX94 980 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 FARP1Q9Y4F1 1045 aaPredicted RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 POLGP54098 1239 aaPredicted RBP8.63□□□□□ -1.03
USP3-201ENST00000268049 TSNAXIP1Q2TAA8 658 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 PRR5LQ6MZQ0 368 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 MMRN2Q9H8L6 949 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 POLR3EQ9NVU0 708 aa8.63□□□□□ -1.03
USP3-201ENST00000268049 FSD2A1L4K1 749 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 SEC24BO95487 1268 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 KRT19P08727 400 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 CCT6AP40227 531 aaKnown RBP8.62□□□□□ -1.03
USP3-201ENST00000268049 CDC42EP1Q00587 391 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 ZNF365Q70YC5 407 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 SMC5Q8IY18 1101 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 TTC14Q96N46 770 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 SAMD15Q9P1V8 674 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 RBM8AQ9Y5S9 174 aaKnown RBP8.62□□□□□ -1.03
USP3-201ENST00000268049 MEGF6O75095 1541 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 TACC1O75410 805 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 CAMTA2O94983 1202 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 MB21D1Q8N884 522 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 KBTBD3Q8NAB2 608 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 ISCA1Q9BUE6 129 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 MAK16Q9BXY0 300 aaKnown RBP8.62□□□□□ -1.03
USP3-201ENST00000268049 GINM1Q9NU53 330 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 GGA3Q9NZ52 723 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 USP42Q9H9J4 1324 aaKnown RBP8.62□□□□□ -1.03
USP3-201ENST00000268049 MXRA7P84157 204 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 PTPROQ16827 1216 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 GIMAP6Q6P9H5 292 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 CNPY4Q8N129 248 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 TMEM87BQ96K49 555 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 ZNF532Q9HCE3 1301 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 A6NNZ2 444 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 CCDC15Q0P6D6 951 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 TKFCQ3LXA3 575 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 TUBB8Q3ZCM7 444 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 TDRD12Q587J7 1177 aaKnown RBP8.62□□□□□ -1.03
USP3-201ENST00000268049 PGBD3Q8N328 593 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 ALG1Q9BT22 464 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 SUGCTQ9HAC7 445 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 CDHR2Q9BYE9 1310 aa8.62□□□□□ -1.03
USP3-201ENST00000268049 GOLGA6CA6NDK9 693 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 GOLGA6BA6NDN3 693 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 HOXA2O43364 376 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 GOLGA6DP0CG33 693 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 RAG1P15918 1043 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 ATP5JP18859 108 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 PTPAQ15257 358 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 CCDC38Q502W7 563 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 LIN9Q5TKA1 542 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 VPS33BQ9H267 617 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 GOLGA6AQ9NYA3 693 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 ODF2LQ9ULJ1 636 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 GMPSP49915 693 aaPredicted RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 TRIM28Q13263 835 aaKnown RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 PLCB4Q15147 1175 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 MUM1L1Q5H9M0 696 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 AGBL3Q8NEM8 1001 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 GPR101Q96P66 508 aaPredicted RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 SMC6Q96SB8 1091 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 ESYT1Q9BSJ8 1104 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 GPAA1O43292 621 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms