RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GKAP1Q5VSY0 366 aaPredicted RBP20.99■□□□□ 0.95
UPF1-201ENST00000262803 PNMA1Q8ND90 353 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 GTPBP6O43824 516 aaPredicted RBP20.99■□□□□ 0.95
UPF1-201ENST00000262803 PLCB4Q15147 1175 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 BBS5Q8N3I7 341 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 PCDHA12Q9UN75 941 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 SCG2P13521 617 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 ARHGAP25P42331 645 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 RASSF2P50749 326 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 PDE6CP51160 858 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 ZMYM1Q5SVZ6 1142 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 LMNTD2Q8IXW0 634 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 PYCARDQ9ULZ3 195 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 TESPA1A2RU30 521 aaPredicted RBP20.99■□□□□ 0.95
UPF1-201ENST00000262803 GPR162Q16538 588 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 TDRD7Q8NHU6 1098 aaKnown RBP20.99■□□□□ 0.95
UPF1-201ENST00000262803 ATP6V0A1Q93050 837 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 ANTXR1Q9H6X2 564 aa20.99■□□□□ 0.95
UPF1-201ENST00000262803 ADD3Q9UEY8 706 aaKnown RBP20.99■□□□□ 0.95
UPF1-201ENST00000262803 ARMCX3Q9UH62 379 aaPredicted RBP20.99■□□□□ 0.95
UPF1-201ENST00000262803 MAN1A1P33908 653 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 SUPT20HL1Q3ZLR7 823 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 XKR9Q5GH70 373 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 SPATA1Q5VX52 437 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 ANKRD35Q8N283 1001 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 MRRFQ96E11 262 aaKnown RBP20.98■□□□□ 0.95
UPF1-201ENST00000262803 NUF2Q9BZD4 464 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 PTPREP23469 700 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 PHLDB2Q86SQ0 1253 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 ALAS1P13196 640 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 GAP43P17677 238 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 KCTD2Q14681 263 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 BCS1LQ9Y276 419 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 IGSF1Q8N6C5 1336 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 IL6STP40189 918 aaPredicted RBP20.98■□□□□ 0.95
UPF1-201ENST00000262803 TECP42680 631 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 MCUR1Q96AQ8 359 aa20.98■□□□□ 0.95
UPF1-201ENST00000262803 PUS3Q9BZE2 481 aaKnown RBP20.98■□□□□ 0.95
UPF1-201ENST00000262803 CAPN9O14815 690 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 GCFC2P16383 781 aaKnown RBP20.97■□□□□ 0.95
UPF1-201ENST00000262803 DENND2CQ68D51 928 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 ZNF589Q86UQ0 364 aaPredicted RBP20.97■□□□□ 0.95
UPF1-201ENST00000262803 LSM14BQ9BX40 385 aaKnown RBP20.97■□□□□ 0.95
UPF1-201ENST00000262803 DDX41Q9UJV9 622 aaKnown RBP20.97■□□□□ 0.95
UPF1-201ENST00000262803 BZW2Q9Y6E2 419 aaKnown RBP20.97■□□□□ 0.95
UPF1-201ENST00000262803 BTDP43251 543 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 PCDHA5Q9Y5H7 936 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 ZNF853P0CG23 659 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 CASC4Q6P4E1 433 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 FAM196AQ6ZSG2 479 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 THAP12O43422 761 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 ADORA1P30542 326 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 ELMSAN1Q6PJG2 1045 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 CABS1Q96KC9 395 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 EFCAB8A8MWE9 144 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 K7ENM7 598 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 PDE8BO95263 885 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 TMEM191BP0C7N4 346 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 PHKA1P46020 1223 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 PPARDQ03181 441 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 SLC39A14Q15043 492 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 ARHGAP44Q17R89 818 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 SLFN13Q68D06 897 aa20.97■□□□□ 0.95
UPF1-201ENST00000262803 KDM6BO15054 1643 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 ABCB5Q2M3G0 1257 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 TSNAXIP1Q2TAA8 658 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 PLA2G4DQ86XP0 818 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 MAP7D3Q8IWC1 876 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 SIRT2Q8IXJ6 389 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 PAGR1Q9BTK6 254 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 DDX25Q9UHL0 483 aaKnown RBP20.96■□□□□ 0.95
UPF1-201ENST00000262803 GOLGA8QA0A0J9YX86 632 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 TYW5A2RUC4 315 aaKnown RBP20.96■□□□□ 0.95
UPF1-201ENST00000262803 GOLGA8OA6NCC3 632 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 GOLGA8NF8WBI6 632 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 KRT10P13645 584 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 NSUN7Q8NE18 718 aaKnown RBP20.96■□□□□ 0.95
UPF1-201ENST00000262803 AK8Q96MA6 479 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 AMNQ9BXJ7 453 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 GREM2Q9H772 168 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 BBOX1O75936 387 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 TROVE2P10155 538 aaKnown RBP eCLIP20.96■□□□□ 0.95
UPF1-201ENST00000262803 KRT15P19012 456 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 LMNB2Q03252 620 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 PTGDRQ13258 359 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 GADL1Q6ZQY3 521 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 FAM178BQ8IXR5 827 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 METTL13Q8N6R0 699 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 PPP4R1Q8TF05 950 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 HAUS4Q9H6D7 363 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 FAM47CQ5HY64 1035 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 RETREG2Q8NC44 543 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 PLEKHA4Q9H4M7 779 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 NRBP1Q9UHY1 535 aa20.96■□□□□ 0.95
UPF1-201ENST00000262803 CEP170Q5SW79 1584 aa20.95■□□□□ 0.95
UPF1-201ENST00000262803 KLRF2D3W0D1 207 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 TLR3O15455 904 aaKnown RBP20.95■□□□□ 0.94
UPF1-201ENST00000262803 KRT71Q3SY84 523 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 RINT1Q6NUQ1 792 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 HAUS8Q9BT25 410 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 163.2 ms